Human analogs of murine deubiquitinating protease

ABSTRACT

The present invention is directed to human analogs of murine hematopoetic-specific, cytokine-inducible deubiquinating proteases (“DUBs”) clustered on chromosomes 4 and 8 and their respective regulatory regions. The nucleotides or proteins encoded thereby my be used in assays to identify inhibitors of human DUBs.

CROSS REFERENCE TO RELATED APPLICATIONS

This application is a divisional of U.S. application Ser. No. 10/371,905, filed on Feb. 20, 2003 which claims the benefit of U.S. Provisional No. 60/358,873, filed on Feb. 22, 2002 and U.S. Provisional No. 60/358,875, filed on Feb. 22, 2002 and U.S. Provisional No. 60/363,020, filed on Mar. 8, 2002 and claims priority to GB0208404.4, filed Apr. 12, 2002, which are hereby incorporated by reference herein in their entireties.

BACKGROUND OF THE INVENTION

The role of ubiquitin in protein degradation was discovered and the main enzymatic reactions of this system elucidated in biochemical studies in a cell-free system from reticulocytes. In this system, proteins are targeted for degradation by covalent ligation to ubiquitin, a 76-amino-acid-residue protein. Briefly, ubiquitin-protein ligation requires the sequential action of three enzymes. The C-terminal Gly residue of ubiquitin is activated in an ATP-requiring step by a specific activating enzyme, E1 (Step 1). This step consists of an intermediate formation of ubiquitin adenylate, with the release of PP_(i), followed by the binding of ubiquitin to a Cys residue of E1 in a thiolester linkage, with the release of AMP. Activated ubiquitin is next transferred to an active site Cys residue of a ubiquitin-carrier protein, E2 (Step 2). In the third step catalyzed by a ubiquitin-protein ligase or E3 enzyme, ubiquitin is linked by its C-terminus in an amide isopeptide linkage to an -amino group of the substrate protein's Lys residues (Step 3).

Proteins ligated to polyubiquitin chains are usually degraded by the 26S proteasome complex that requires ATP hydrolysis for its action. The 26S proteasome is formed by an ATP-dependent assembly of a 20S proteasome, a complex that contains the protease catalytic sites, with 19S “cap” or regulatory complexes. The 19S complexes contain several ATPase subunits and other subunits that are presumably involved in the specific action of the 26S proteasome on ubiquitinylated proteins. The roles of ATP in the assembly of the 26S proteasome complex and in its proteolytic action are not understood. The action of the 26S proteasome presumably generates several types of products: free peptides, short peptides still linked to ubiquitin via their Lys residues, and polyubiquitin chains (Step 4). The latter two products are converted to free and reusable ubiquitin by the action of ubiquitin-C-terminal hydrolases or isopeptidases (Steps 5 and 6). Some isopeptidases may also disassemble certain ubiquitin-protein conjugates (Step 7) and thus prevent their proteolysis by the 26S proteasome. The latter type of isopeptidase action may have a correction function to salvage incorrectly ubiquitinylated proteins or may have a regulatory role. Short peptides formed by the above processes can be further degraded to free amino acids by cytosolic peptidases (Step 8).

Ubiquitin-mediated degradation of protein is involved in various biological processes. The selective and programmed degradation of cell-cycle regulatory proteins, such as cyclins, inhibitors of cyclin-dependent kinases, and anaphase inhibitors are essential events in cell-cycle progression. Cell growth and proliferation are further controlled by ubiquitin-mediated degradation of tumor suppressors, protooncogenes, and components of signal transduction systems. The rapid degradation of numerous transcriptional regulators is involved in a variety of signal transduction processes and responses to environmental cues. The ubiquitin system is clearly involved in endocytosis and down-regulation of receptors and transporters, as well as in the degradation of resident or abnormal proteins in the endoplasmic reticulum. There are strong indications for roles of the ubiquitin system in development and apoptosis, although the target proteins involved in these cases have not been identified. Dysfunction in several ubiquitin-mediated processes causes pathological conditions, including malignant transformation.

Our knowledge of different signals in proteins that mark them for ubiquitinylation is also limited. Recent reports indicate that many proteins are targeted for degradation by phosphorylation. It was observed previously that many rapidly degraded proteins contain PEST elements, regions enriched in Pro, Glu, Ser, and Thr residues. More recently, it was pointed out that PEST elements are rich in S/TP sequences, which are minimum consensus phosphorylation sites for Cdks and some other protein kinases. Indeed, it now appears that in several (though certainly not all) instances, PEST elements contain phosphorylation sites necessary for degradation. Thus multiple phosphorylations within PEST elements are required for the ubiquitinylation and degradation of the yeast G1 cyclins Cln3 and Cln2, as well as the Gcn4 transcriptional activator. Other proteins, such as the mammalian G1 regulators cyclin E and cyclin D1, are targeted for ubiquitinylation by phosphorylation at specific, single sites. In the case of the IkBα inhibitor of the NF-kB transcriptional regulator, phosphorylation at two specific sites, Ser-32 and Ser-36, is required for ubiquitin ligation. β-cateinin, which is targeted for ubiquitin-mediated degradation by phosphorylation, has a sequence motif similar to that of IkBα around these phosphorylation sites. However, the homology in phosphorylation patterns of these two proteins is not complete, because phosphorylation of other sites of β-cateinin is also required for its degradation. Other proteins targeted for degradation by phosphorylation include the Cdk inhibitor Siclp and the STAT1 transcription factor. Though different patterns of phosphorylation target different proteins for degradation, a common feature appears to be that the initial regulatory event is carried out by a protein kinase, while the role of a ubiquitin ligase would be to recognize the phosphorylated form of the protein substrate. It further appears that different ubiquitin ligases recognize different phosphorylation patterns as well as additional motifs in the various protein substrates. However, the identity of such E3s is unknown, except for some PULC-type ubiquitin ligases that act on some phosphorylated cell-cycle regulators in the budding yeast. The multiplicity of signals that target proteins for ubiquitin-mediated degradation (and of ligases that have to recognize such signals) is underscored by observations that the phosphorylation of some proteins actually prevents their degradation. Thus the phosphorylation of the c-Mos protooncogene on Ser3 and the multiple phosphorylations of c-Fos and c-Jun protooncogenes at multiple sites by MAP kinases suppress their ubiquitinylation and degradation.

In addition to the families of enzymes involved in conjugation of ubiquitin, a very large family of deubiquitinating enzymes has recently been identified from various organisms. These enzymes have several possible functions. First, they may have peptidase activity and cleave the products of ubiquitin genes. Ubiquitin is encoded by two distinct classes of genes. One is a polyubiquitin gene, which encodes a linear polymer of ubiquitins linked through peptide bonds between the C-terminal Gly and N-terminal Met of contiguous ubiquitin molecules. Each copy of ubiquitin must be released by precise cleavage of the peptide bond between Gly-76-Met-1 of successive ubiquitin moieties. The other class of ubiquitin genes encodes ubiquitin C-terminal extension proteins, which are peptide bond fusions between the C-terminal Gly of ubiquitin and N-terminal Met of the extension protein. To date, the extensions described are ribosomal proteins consisting of 52 or 76-80 amino acids. These ubiquitin fusion proteins are processed to yield ubiquitin and the corresponding C-terminal extension proteins. Second, deubiquitinating enzymes may have isopeptidase activities. When a target protein is degraded, deubiquitinating enzymes can cleave the polyubiquitin chain from the target protein or its remnants. The polyubiquitin chain must also be disassembled by deubiquitinating enzymes during or after proteolysis by the 26 S proteasome, regenerating free monomeric ubiquitin. In this way, deubiquitinating enzymes can facilitate the ability of the 26 S proteasome to degrade ubiquitinated proteins. Third, deubiquitinating enzymes may hydrolyze ester, thiolester, and amide linkages to the carboxyl group of Gly-76 of ubiquitin. Such nonfunctional linkages may arise from reactions between small intracellular compounds such as glutathione and the E1-, E2-, or E3-ubiquitin thiolester intermediates. Fourth, deubiquitinating enzymes may compete with the conjugating system by removing ubiquitin from protein substrates, thereby rescuing them from degradation or any other function mediated by ubiquitination. Thus generation of ubiquitin by deubiquitinating enzymes from the linear polyubiquitin and ubiquitin fusion proteins and from the branched polyubiquitin ligated to proteins should be essential for maintaining a sufficient pool of free ubiquitin. Many deubiquitinating enzymes exist, suggesting that these deubiquitinating enzymes recognize distinct substrates and are therefore involved in specific cellular processes. Although there is recent evidence to support such specificity of these deubiquitinating enzymes, the structure-function relationships of these enzymes remain poorly studied.

Deubiquitinating enzymes can be divided broadly on the basis of sequence homology into two classes, the ubiquitin-specific processing protease (UBP or USP, also known as type 2 ubiquitin C-terminal hydrolase (type 2 UCH)) and the UCH, also known as type 1 UCH). UCH (type 1 UCH) enzymes hydrolyze primarily C-terminal esters and amides of ubiquitin but may also cleave ubiquitin gene products and disassemble polyubiquitin chains. They have in common a 210-amino acid catalytic domain, with four highly conserved blocks of sequences that identify these enzymes. They contain two very conserved motifs, the CYS and HIS boxes. Mutagenesis studies revealed that the two boxes play important roles in catalysis. Some UCH enzymes have significant C-terminal extensions. The functions of the C-terminal extensions are still unknown but appear to be involved in proper localization of the enzyme. The active site of these UCH enzymes contains a catalytic triad consisting of cysteine, histidine, and aspartate and utilizes a chemical mechanism similar to that of papain. The crystal structure of one of these, UCH-L3, has been solved at 1.8 Å resolution. The enzyme comprises a central antiparallel β-sheet flanked on both sides by helices. The β-sheet and one of the helices are similar to those observed in the thiol protease cathepsin B. The similarity includes the three amino acid residues that comprise the active site, Cys⁹⁵, His¹⁶⁹, and Asp¹⁸⁴. The active site appears to fit the binding of ubiquitin that may anchor also at an additional site. The catalytic site in the free enzyme is masked by two different segments of the molecule that limit nonspecific hydrolysis and must undergo conformational rearrangement after substrate binding.

UBP (type 2 UCH) enzymes are capable of cleaving the ubiquitin gene products and disassembling polyubiquitin chains after hydrolysis. It appears that there is a core region of about 450 amino acids delimited by CYS and HIS boxes. Many of these isoforms have N-terminal extensions and a few have C-terminal extensions. In addition, there are variable sequences in the core region of many of the isoforms. The functions of these divergent sequences remain poorly characterized. Another interesting function of specific UBPs is the regulation of cell proliferation. It was observed that cytokines induced in T-cells specific de-ubiquitinating enzymes (DUBs), termed DUB-1 and DUB-2. DUB-1 is induced by stimulation of the cytokine receptors for IL-3, IL-5, and GM-CSF, suggesting a role in its induction for the β-common (betac) subunit of the interleukin receptors. Overexpression of a dominant negative mutant of JAK2 inhibits cytokine induction of DUB-1, suggesting that the regulation of the enzyme is part of the cell response to the JAK/STAT signal transduction pathway. Continued expression of DUB-1 arrests cells at G₁; therefore, the enzyme appears to regulate cellular growth via control of the G₀-G₁ transition. The catalytic conserved Cys residue of the enzyme is required for its activity. DUB-2 is induced by IL-2 as an immediate early (IE) gene that is down-regulated shortly after the initiation of stimulation. The function of this enzyme is also obscure. It may stimulate or inhibit the degradation of a critical cell-cycle regulator.

Cytokines, such as interleukin-2 (IL-2), activate intracellular signaling pathways via rapid tyrosine phosphorylation of their receptors, resulting in the activation of many genes involved in cell growth and survival. The deubiquitinating enzyme DUB-2 is induced in response to IL-2 and is expressed in human T-cell lymphotropic virus-I (HTLV-1)-transformed T cells that exhibit constitutive activation of the IL-2 JAK/STAT (signal transducers and activators of transcription) pathway, and when expressed in Ba/F3 cells DUB-2 markedly prolonged IL-2-induced STAT5 phosphorylation. Although DUB-2 does not enhance IL-2-mediated proliferation, when withdrawn from growth factor, cells expressing DUB-2 had sustained STAT5 phosphorylation and enhanced expression of IL-2-induced genes cis and c-myc. DUB-2 expression markedly inhibited apoptosis induced by cytokine withdrawal allowing cells to survive. Therefore, DUB-2 has a role in enhancing signaling through the JAK/STAT pathway, prolonging lymphocyte survival, and, when constitutively expressed, may contribute to the activation of the JAK/STAT pathway observed in some transformed cells. (Migone, T.-S., et al., Blood. 2001; 98:1935-1941).

Protein ubiquitination is an important regulator of cytokine-activated signal transduction pathways and hematopoietic cell growth. Protein ubiquitination is controlled by the coordinate action of ubiquitin-conjugating enzymes and deubiquitinating enzymes. Recently a novel family of genes encoding growth-regulatory deubiquitinating enzymes (DUB-1 and DUB-2) has been identified. DUBs are immediate-early genes and are induced rapidly and transiently in response to cytokine stimuli. By means of polymerase chain reaction amplification with degenerate primers for the DUB-2 complementary DNA, 3 murine bacterial artificial chromosome (BAC) clones that contain DUB gene sequences were isolated. One BAC contained a novel DUB gene (DUB-2A) with extensive homology to DUB-2. Like DUB-1 and DUB-2, the DUB-2A gene consists of 2 exons. The predicted DUB-2A protein is highly related to other DUBs throughout the primary amino acid sequence, with a hypervariable region at its C-terminus. In vitro, DUB-2A had functional deubiquitinating activity; mutation of its conserved amino acid residues abolished this activity. The 5′ flanking sequence of the DUB-2A gene has a hematopoietic-specific functional enhancer sequence. It is proposed that there are at least 3 members of the DUB subfamily (DUB-1, DUB-2, and DUB-2A) and that different hematopoietic cytokines induce specific DUB genes, thereby initiating a cytokine-specific growth response. (Baek, K.-H., et al, Blood. 2001; 98:636-642).

Protein ubiquitination also serves regulatory functions in the cell that do not involve proteasome-mediated degradation. For example, Hicke and Riezman have recently demonstrated ligand-inducible ubiquitination of the Ste2 receptor in yeast. Ubiquitination of the Ste2 receptor triggers receptor endocytosis and receptor targeting to vacuoles, not proteasomes. Also, Chen et al. have demonstrated that activation of the IB kinase requires a rapid, inducible ubiquitination event. This ubiquitination event is a prerequisite for the specific phosphorylation of IB and does not result in subsequent proteolysis of the kinase complex. The ubiquitination of Ste2 and IB kinase appears reversible, perhaps resulting from the action of a specific deubiquitinating enzyme.

A large superfamily of genes encoding deubiquitinating enzymes, or UBPs, has recently been identified. UBPs are ubiquitin-specific thiol-proteases that cleave either linear ubiquitin precursor proteins or post-translationally modified proteins containing isopeptide ubiquitin conjugates. The large number of UBPs suggests that protein ubiquitination, like protein phosphorylation, is a highly reversible process that is regulated in the cell.

Interestingly, UBPs vary greatly in length and structural complexity, suggesting functional diversity. While there is little amino acid sequence similarity throughout their coding region, sequence comparison reveals two conserved domains. The Cys domain contains a cysteine residue that serves as the active enzymatic nucleophile. The His domain contains a histidine residue that contributes to the enzyme's active site. More recent evidence demonstrates six homology domains contained by all members of the ubp superfamily. Mutagenesis of conserved residues in the Cys and His domains has identified several residues that are essential for UBP activity.

Recently, a growth regulatory deubiquitinating enzyme, DUB-1, that is rapidly induced in response to cytokine receptor stimulation was identified. DUB-1 is specifically induced by the receptors for IL-3, granulocyte macrophage-colony-stimulating factor, and IL-5, suggesting a specific role for the c subunit shared by these receptors. In the process of cloning the DUB-1 gene, a family of related, cross-hybridizing DUB genes was identified. From this, other DUB genes might be induced by different growth factors. Using this approach, an IL-2-inducible DUB enzyme, DUB-2 and closely related DUB-2a were identified. DUB-1 and DUB-2 are more related to each other than to other members of the ubp superfamily and thereby define a novel subfamily of deubiquitinating enzymes.

Hematopoietic-specific, cytokine induced DUBs in murine system have shown to prolong cytokine receptor, see Migone, T. S., et al. (2001). The deubiquitinating enzyme DUB-2 prolongs cytokine-induced signal transducers and activators of transcription activation and suppresses apoptosis following cytokine withdrawal, Blood 98, 1935-41; Zhu, Y., et al., (1997). DUB-2 is a member of a novel family of cytokine-inducible deubiquitinating enzymes, J Biol Chem 272, 51-7 and Zhu, Y., et al., (1996). The murine DUB-1 gene is specifically induced by the betac subunit of interleukin-3 receptor, Mol Cell Biol 16, 4808-17.). These effects are likely due to the deubiquitination of receptors or other signaling intermediates by DUB-1 or DUB-2, murine analogs of hDUBs. Inhibition of hDUBs may achieve downregulation of specific cytokine receptor signaling, thus modulating specific immune responses.

Cytokines regulate cell growth by inducing the expression of specific target genes. A recently identified a cytokine-inducible, immediate-early gene, DUB-1, encodes a deubiquitinating enzyme with growth regulatory activity. In addition, a highly related gene, DUB-2, that is induced by interleukin-2 was identified. The DUB-2 mRNA was induced in T cells as an immediate-early gene and was rapidly down-regulated. Like DUB-1, the DUB-2 protein had deubiquitinating activity in vitro. When a conserved cysteine residue of DUB-2, required for ubiquitin-specific thiol protease activity, was mutated to serine (C60S), deubiquitinating activity was abolished. DUB-1 and DUB-2 proteins are highly related throughout their primary amino acid sequence except for a hypervariable region at their COOH terminus. Moreover, the DUB genes co-localize to a region of mouse chromosome 7, suggesting that they arose by a tandem duplication of an ancestral DUB gene. Additional DUB genes co-localize to this region, suggesting a larger family of cytokine-inducible DUB enzymes. We propose that different cytokines induce specific DUB genes. Each induced DUB enzyme thereby regulates the degradation or the ubiquitination state of an unknown growth regulatory factor, resulting in a cytokine-specific growth response.

On the basis of these structural criteria, additional members of the DUB subfamily can be identified in the GenBank™. The highest degree of homologyis in the Cys and His domains. Additionally, this putative human DUB protein contains a Lys domain (amino acids 400-410) and a hypervariable region (amino acids 413-442).

Murine DUB (mDUB) subfamily members differ from other UBPs by functional criteria as well. mDUB subfamily members are cytokine-inducible, immediate-early genes and may therefore play regulatory roles in cellular growth or differentiation. Also, DUB proteins are unstable and are rapidly degraded by ubiquitin-mediated proteolysis shortly after their induction.

mDUB reports demonstrate that specific cytokines, such as IL-2 and IL-3, induce specific deubiquitinating enzymes (DUBs). The DUB proteins may modify the ubiquitin-proteolytic pathway and thereby mediate specific cell growth or differentiation signals. These modifications are temporally regulated. The DUB-2 protein, for instance, is rapidly but transiently induced by IL-2. Interference of DUB enzymes with specific isopeptidase inhibitors may block specific cytokine signaling events.

Defensins constitute a major family of antimicrobial peptides in mammals. Depending on the distribution of the cysteines and the linkages of the disulfide bonds, human defensins can be divided into two categories: α-defensins, which can be found in granulocytes and in epithelial cells of the small intestine, and β-defensins, which are expressed by epithelial cells and leukocytes including macrophages. Some defensins are expressed constitutive manner in granulocytes and epithelial cells where as others are induces by either exposure to microbial pathogens or pro-inflammatory cytokines such as IL-1β, TNF-α and interferon-γ. The genes coding for human defensins are clustered within 1 Mb segment on chromosome 8P23, and it has been suggested that β-defensins may predate the a-defensin family during recent gene amplification since α-defensin cannot be detected even in many mammalians including cow. Cow has at least 13 β-defensins but no α-defensin. β-defensins contribute to early host defense against several bacterial and fungal pathogens, as an important mechanism of innate immune response. Beside this antimicrobial activity, a chemoattractant activity on both immature dentritic cells and memory T cells, as well as monocytes, has been recently described, demonstrating that β-defensins may promote both innate and adaptive immune response.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1: Proposed enzyme reaction mechanism of DUB-

SUMMARY OF THE INVENTION

The present invention is directed to analogs of murine DUBs, hematopoietic-specific, cytokine-inducible deubiquitinating proteases found as a cluster of genes on chromosomes 4 and 8 and respective regulatory regions. Eleven novel human DUBs and four potential genes that express truncated form of DUBs not previously reported in public databases were identified by searching human genome database using murine DUB-1 and DUB-2 sequences. These genes share open reading frames (ORFs) that are 88 to 99% amino acid identity to each other, when gaps caused by deletion and N-terminal and/or C-terminal extension was not counted as mismatch, and exhibit approximately 50% identity to murine DUBs. Eight of eleven ORFs generate a protein of 530 amino acids. Two ORFs (hDUB8.3 and hDUB8.11) have internal in-frame deletions such that the genes are capable of generating 497 and 417 amino acid long polypeptides, respectively. One ORF (hDUB4.5) exhibits extension at both 5′ and 3′ end of the ORF so that the gene is capable of expressing 574 amino acid long polypeptide. Surprisingly, this 5′ extension results in specific pro-polypeptide sequence that can direct polypeptide targeting to the mitochondria. Furthermore, the respective regulatory regions, putative promoters, of these genes also share close to 90% identity each other suggesting that their expression is coordinated. In addition, we found that two of these genes can be expressed under the control of separate promoters that can be controlled independently and expressing potentially distinctive protein products.

Manipulation of these gene products by small molecular compounds can (1) reduce inflammation by regulating proinflammatory cytokine signaling, (2) modulate autoimmune diseases by regulating cytokine receptor signaling that are critical for lymphocytes proliferation, and (3) immune over-reaction during infection using above mechanisms.

Two of cluster genes (hDUB4.1 and hDUB4.2) possesses two distinctive promoter domains in front of their ORFs such that they can be regulated independently in their transcription potential. The longer transcripts of these ORFs (called hDUB4.1a and hDUB4.2a) has 12 and 4 exons respectively and capable of generating 1016 and 1021 amino acid long polypeptides, respectively. These polypeptides share C-terminal 530 amino acids with their shorter form that can be expressed separately from independent promoters (called hDUB4.1b and hDUB4.2b, respectively). In addition, two other ORFs are capable of generating longer than 530 amino acid polypeptides (hDUB4.10 and hDUB4.11). Remarkably, these two deduced polypeptides shares significant homology within portion of N-terminal portions (I added alignment file of these at the end of sequence file). Three of the ORFs (hDUB4.5, 4.8, and 8.2) has N-terminal insertion that is typical for mitochondria targeting sequence. An alignment of these sequences is provide in the Tables. The promoter sequences defined as upstream of initiation ATG of the ORF exhibit remarkable level of homology each other except that of hDUB4.1a. The sequence identity among all promoter sequences except that of hDUB4.1a is approximately 90% in 2000 base pair span upstream of initiation ATG. Two of the promoter sequences (hDUB8.3 and 8.11) have 334 nucleotides insertion at approximately 1000 base pair upstream of initiation ATG. Interestingly, hDUB8.3 and hDUB8.11 are the only ones with shorter ORFs due to the internal deletions. In addition to these ORFs, there are 5 ORFs that are capable of expressing polypeptides (hDUB4.4, hDUB4.9, hDUB8.2, hDUB8.9, and hDUB8.10) that share initiation codon with other 530 amino acid long polypeptides but terminate prematurely due to the in frame termination sequences. These also shares significant homology upstream of ATG initiation codon suggesting they may expressed as truncated proteins, potential regulatory functions. All 11 hDUB8 genes are clustered with the defensin clusters within 2 Mb region in 8P23, implying that both acquisition and amplification are relatively recent event, perhaps during mammalian evolution. It is of interest that hDUB4 gene cluster is also in highly amplified cluster region of chromosome 4P16 that is yet to be assigned in chromosome location. These data suggest that hDUB4s and hDUB8s are within very dynamic region of the human chromosomes (both 4p 16 and 8p23) that are undergoing volatile amplifications. The data also suggest that expression of hDUB8 may also be coordinated in conjunction with defensins that are critical components of innate immune response and inflammation.

Search Methods for Identifying Human Analogs of mDUBs:

In order to identify human analogs of mDUB1, -2, -2A, mDUB1 (U41636), mDUB2 (NM_(—)010089), and mDUB2A (AF393637) DNA sequences were used to search against Ensembl entire “golden path” (as contigs) using Ensembl blast search engine (http://www.ensembl.org/perl/blastview). All three mDUBs have significant alignments with contig AC083981, AF252831, AF228730, AF252830, AC068974 on chromosome 8 with the high score above 2000 and the probability less than e-87. In order to find all the homolog genes in the genome, exhaust search was performed using genomic aligned sequence to search against the “golden path” contigs. Two more contigs were found to have significant alignment that has probability less than e-100: one is AC074340 on chromosome 8 and the other is AC022770 on chromosome 4.

DNA sequences for contig AC083981, AF252831, AF228730, AF252830, AC068974, AC074340 and AC022770 were downloaded from Ensembl and gene annotation for each contig was performed using GenScan gene annotation program. Genes having homolog with mDUBs were named in sequence based on their locations on chromosomes.

For example, hDUB8.1 was derived from AF228730, 8.2, 8.3 were derived from AF252830, 8.5 were derived from AC074340, 8.6 were derived from AF252831, 8.7, 8.8 and 8.9 were derived from AC083981, and 8.10 and 8.11 were derived from AC068974. hDUB4.1, 4.2, 4.3, 4.4, 4.5 were derived from AC022770 on chromosome 4.

Using these hDUB4s and hDUB8s, both Ensemble and NCBI blast search was performed. Further contig NT_(—)028165 that covers chromosome 4 was identified. From this and already assembled chromosome 4p16.1 region, further annotation was performed using GenScan gene annotation program. From this we identified hDUB4.6, 4.7, 4.8, 4.9, 4.10, and 4.11.

Analysis of the hDUB gene clusters in chromosome 4 reveals that at least five ORFs in an unmapped cOntig (AC022770) were identified by nucleotide homology search with murine DUB1 and 2. At least four out of five ORFs share core 530 amino acid sequences. Two ORFs (hDUB4.1 and hDUB4.2) are multi-exon ORFs that extend N-terminal part of polypeptides that shares minimal sequence identity. However, there is a conserved putative promoter sequences that encompass over 2,000 bases in the intron region proximal to the last exon that is conserved among all 5 genes. Three of the ORFs (hDUB4.5, 4.8, and 8.2) has N-terminal insertion that is typical for mitochondria targeting sequence. The hDUB genes cluster in 4P16 of the human chromosome, which is an unmapped part of the human chromosome.

Analysis of the hDUB gene clusters in chromosome 8 reveals that at least eleven ORFs in six different contigs (AC068974, AC074340, AC083981, AF228730, AF252830, and AF252831) were identified by nucleotide homology search with murine DUB1 and 2. At least seven out of eleven ORFs share significant identities with similar length. There are conserved putative promoter sequences that encompass over 2,000 bases in all 11 genes. The hDUB genes cluster in 8P23.1 of the human chromosome and clustered with defensin molecules (at lease 9 defensins are clustered with hDUB8s) and the whole domain belongs the olfactory GPCR cluster.

Analysis of the deduced amino acid sequences of the hDUBs reveals polypeptides consistent with mDUBs, which contain highly conserved Cys and His domains that are likely to form the enzyme's active site. The putative active site nucleophile of mDUB-2 is a cysteine residue (Cys⁻⁶⁰) in the Cys domain. Both mDUB-1 and mDUB-2 have a lysine rich region (Lys domain; amino acids 374-384 of mDUB-2) and a short hypervariable region (amino acids 385-451 of mDUB-2), in which the mDUB-1 and mDUB-2 sequences diverge considerably. The hypervariable (HV) region of mDUB-2 contains a duplication of the eight-amino acid sequence: PQEQNHQK (Seq ID No. 55).

The protein and nucleotide sequences named in this invention and their corresponding Sequence ID No are set forth as following:

Nucleotide Sequence for hDUB4.1a: Seq ID No. 3

hDUB4.1a deduced polypeptide sequence: Seq ID No. 4

Nucleotide Sequence for hDUB4.1b: Seq ID No. 5

hDUB4.1b deduced polypeptide sequence: Seq ID No. 6

Nucleotide Sequence for hDUB4.2a: Seq ID No. 7

hDUB4.2a deduced polypeptide sequence: Seq ID No. 8

Nucleotide Sequence for hDUB4.2b: Seq ID No. 9

hDUB4.2b deduced polypeptide sequence: Seq ID No. 10

Nucleotide Sequence for hDUB4.3: Seq ID No. 11

hDUB4.3 deduced polypeptide sequence: Seq ID No. 12

Nucleotide Sequence for hDUB4.5: Seq ID No. 13

hDUB4.5 deduced polypeptide sequence: Seq ID No. 14

Nucleotide Sequence for hDUB4.6: Seq ID No. 15

hDUB4.6 deduced polypeptide sequence: Seq ID No. 16

Nucleotide Sequence for hDUB4.7: Seq ID No. 17

hDUB4.7 deduced polypeptide sequence: Seq ID No. 18

Nucleotide Sequence for hDUB4.8: Seq ID No. 19

hDUB4.8 deduced polypeptide sequence: Seq ID No. 20

Nucleotide Sequence for hDUB4.10: Seq ID No. 21

hDUB4.10 deduced polypeptide sequence: Seq ID No. 22

Nucleotide Sequence for hDUB4.11: Seq ID No. 23

hDUB4.11 deduced polypeptide sequence: Seq ID No. 24

Nucleotide Sequence for hDUB8.1: Seq ID No. 25

hDUB8.1 deduced polypeptide sequence: Seq ID No. 26

Nucleotide Sequence for hDUB8.3: Seq ID No. 27

hDUB8.3 deduced polypeptide sequence: Seq ID No. 28

Nucleotide Sequence for hDUB8.5: Seq ID No. 29

hDUB8.5 deduced polypeptide sequence: Seq ID No. 30

Nucleotide Sequence for hDUB8.6: Seq ID No. 31

hDUB8.6 deduced polypeptide sequence: Seq ID No. 32

Nucleotide Sequence for hDUB8.7: Seq ID No. 33

hDUB8.7 deduced polypeptide sequence: Seq ID No. 34

Nucleotide Sequence for hDUB8.8: Seq ID No. 35

hDUB8.8 deduced polypeptide sequence: Seq ID No. 36

Nucleotide Sequence for hDUB8.11: Seq ID No. 37

hDUB8.11 deduced polypeptide sequence: Seq ID No. 38

Nucleotide Sequence for hDUB4.4: Seq ID No. 39

hDUB4.4 deduced polypeptide sequence: Seq ID No. 40

Nucleotide Sequence for hDUB4.9: Seq ID No. 41

hDUB4.9 deduced polypeptide sequence: Seq ID No. 42

Nucleotide Sequence for hDUB8.2: Seq ID No. 43

hDUB8.2 deduced polypeptide sequence: Seq ID No. 44

Nucleotide Sequence for hDUB8.9: Seq ID No. 45

hDUB8.9 deduced polypeptide sequence: Seq ID No. 46

Nucleotide Sequence for hDUB8.10: Seq ID No. 47

hDUB8.10 deduced polypeptide sequence: Seq ID No. 48

Promoter sequence for hDUB4.6: Seq ID No. 49

Promoter sequence for hDUB4.7: Seq ID No. 50

Promoter sequence for hDUB4.8: Seq ID No. 51

Promoter sequence for hDUB4.9: Seq ID No. 52

Promoter sequence for hDUB4.10: Seq ID No. 53

Promoter sequence for hDUB4.11: Seq ID No. 54

TaqMan Real Time PCR Analysis of Expression of hDUB4s and hDUB8s in Human Immunocytes Upon Various Stimulation

Protocol of reverse transcription (RT) from total cellular RNA using random hexamer as primer (using TaqMan Reverse Transcription Reagents Cat# N808-0234)

1 ug of total RNA preparation in 100 ul of 1×TaqMan RT Buffer Mix, 5.5 mM MgCl₂, 0.5 mM dNTPs, 2.5 uM Random Hexamers, 40 U RNAse inhibitor, 125U Multiscribe Reverse Transcriptase. Mix by pipeting up and down. Incubate 25° C. for 10 minutes (annealing step), 48° C. for 30 minutes (reverse transcription), and 95° C. for 5 minutes (heat killing of the enzyme). The samples can be left at the machine at 4° C., or alternatively, can be stored at −20° C. Yield of cDNA synthesis can be measured by incorporation of small portion of radioactive dATP (or dCTP). Average efficiency for this protocol is between 60-80% of conversion of RNA to cDNA.

Protocol of TaqMan Real-Time Quantitative PCR

1 ul of TaqMan RT product in 12.5 ul of 1× master Mix (Applied Biosystems Cat# 4304437) containing all necessary reaction components except primers and probes, 0.9 uM forward primer, 0.9 uM reverse primer, 0.2 uM probe. Mix by pipetting up and down. Samples containing GADPH primer pair and probe were also prepared as control. Thermal cycling and detection of the real-time amplification were performed using the ABI PRISM 7900HT Sequence Detection System. The quantity of target gene is given relative to the GADPH control based on C_(t) values determined during the exponential phase of PCR.

Primer-Probe Sets Used and their Specificities:

Primer 4.1 is unique for hDUB 4.1

Primer 4.2 covers hDUB 4.2, 4.3, 4.5 and 8.1

Primer 8.3 covers hDUB 8.3 and 8.11

Primer 8.5 is unique for hDUB 8.5

Primer 8.6 covers hDUB 8.6, 8.7 and 8.8 TABLE 1 Expression of hDUBs in PBMC stimulated with LPS (100 ng/ml) and PHA (5 μg/ml) for 7 hours. Donor 1 Fold- Donor 2 Upregulation Relative Fold-Upregulation Relative Primer upon stimulation expression upon stimulation expression 4.1 2.2 1 3.8 1 4.2 2.0 21000 2.0 16400 8.3 1.8 5560 1.8 5500 8.5 2.1 80 3.1 310 8.6 2.6 19200 3.0 23000

TABLE 2 Expression of hDUBS in PBMC stimulated with LPS (100 ng/ml) for 1.5, 7 and 24 hours (DONOR 4) 1.5 hours 7 hours 24 hours Fold- Fold- Fold- Upregulation Upregulation Upregulation upon Relative upon Relative upon Relative Primer stimulation expression stimulation expression stimulation expression 4.2 2.4 64 336 35.2 1.8 12.5 8.3 0.4 1 13.1 1 1.7 1 8.5 1.6 11 65.9 4.8 1.5 1.8

TABLE 3 Expression of DUBs in PBMC stimulated with LPS (100 ng/ml) and/or PHA (5 ug/ml) for 1.5, 7, 24 hours (donor 4) 1.5 hours 7 hours 24 hours Fold- Fold- Fold- Upregulation Upregulation Upregulation upon Relative upon Relative upon Relative Stimuli stimulation expression stimulation expression stimulation expression LPS 4.2 0.4 39 2.5 54 1.6 48 8.3 0.5 5 1.6 6 1.1 7 8.5 0.9 1 1.5 1.7 1.4 2 8.6 0.6 26 1.7 57 1.0 21 PHA 4.2 3.5 367 4.4 94 0.9 26 8.3 1.5 13 1.7 6 0.7 5 8.5 1.9 2 0.9 1 0.7 1 8.6 2.3 103 2.5 23 0.8 17 LPS + PHA 4.2 1.2 129 3.4 73 0.8 23 8.3 1.0 9 2.2 8 0.7 5 8.5 1.0 1 0.9 1.3 0.9 1.2 8.6 1.3 56 2.5 33 0.8 18

There is no increase of expression in T lymphocytes (donor 5) and B lymphocytes (donor 6) when stimulated with anti-CD4/CD28 and anti-CD40/IL-4, respectively. TABLE 4 Expression of hDUB 4.2, 4.3, 4.5 and 8.1 examined by primer 4.2 in different human organ panel by TaqMan analysis. β2 Tissue Type Mean Mean ∂∂ Ct Expression Adrenal Gland 29.72 20.00 10.08 0.92 Bone marrow 34.02 20.49 13.89 0.07 Brain 26.92 22.73 4.54 42.84 Colon 32.03 19.97 12.42 0.18 Fetal Brain 27.59 24.23 3.71 76.15 Fetal Liver 33.22 22.58 10.99 0.49 Heart 33.09 21.60 11.85 0.27 Kidney 29.93 21.97 8.32 3.13 Lung 32.10 19.31 13.15 0.11 Mammary Gland 30.00 21.74 8.61 2.56 Pancreas 34.83 24.07 11.11 0.45 Placenta 36.60 23.77 13.19 0.00 Prostate 29.14 20.93 8.55 2.66 Salivary Gland 32.11 21.39 11.07 0.46 Skeletal Muscle 28.27 20.44 8.18 3.45 Small Intestine 34.33 21.00 13.69 0.08 Spinal Cord 27.04 21.91 5.47 22.48 Spleen 32.45 19.02 13.78 0.07 Stomach 32.15 21.66 10.84 0.55 Testis 28.57 23.07 5.87 17.16 Thymus 31.01 20.68 10.69 0.61 Thyroid 28.84 20.80 8.39 2.97 Trachea 31.39 19.63 12.11 0.23 Uterus 30.37 21.09 9.64 1.25 PBMC/Control 33.98 18.82 15.52 0.02 PBMC/PMA 33.62 18.81 15.17 0.03 PBMC/PHA 34.20 18.77 15.78 0.02 PBMC/HDM 34.23 17.81 16.77 0.01 A549 Cells 31.98 21.57 10.77 0.57 THP-1 35.48 20.75 15.09 0.00 Ovary 31.84 21.55 10.65 0.62 (+ve) Positive Control 29.61 21.86 8.11 3.62

TABLE 5 Expression of hDUB 4.2, 4.3, 4.5 and 8.1 examined by primer 4.2 in human immunocytes panel: Cell Type and stimulation β2 condition Mean Mean ∂∂ Ct Expression Granulocyte resting 34.18 17.22 17.50 0.005 Granulocyte TNF-

4/24 hr 32.39 17.16 15.76 0.018 CD19 (tonsillar - CD40L) 28.7 19.92 9.32 1.565 CD19 (tonsillar - LPS) 31.14 20.67 11.00 0.488 FLS-REST 34.67 20.43 14.78 0.036 FLS-IL1 4/24 hr 34.26 20.41 14.38 0.047 FLS-TNF-

4/24 hr 34.91 20.15 15.31 0.025 Monocyte resting (pool 1.5, 7, 33.63 18.29 15.89 0.017 24 hr) Monocyte LPS (pool 1.5, 7, 24 hr) 34.55 18.03 17.06 0.007 Monocyte INF-g (pool 1.5, 7, 34.62 17.27 17.88 0.004 24 hr) Monocyte LPS & IFN-

(pool 34.87 17.38 18.03 0.004 1.5, 7, 24 hr) DCs progenitors (CD14+) 35.87 19.73 16.67 0.000 DCs immature 35.48 18.18 17.84 0.000 DCs mature 37.46 17.92 20.07 0.000 TH0 resting 31.11 17.63 14.02 0.060 TH0 activated 31.29 18.23 13.60 0.081 Th1 resting 33.88 18.27 16.15 0.014 Th1 CD28/CD3 32.15 19.31 13.38 0.094 Th2 resting 33.94 18.07 16.40 0.012 Th2 CD28/CD3 33.27 18.78 15.02 0.030 BSMC 35.33 21.64 14.22 0.000 BSMC IL-4 + TNF-

24 hr 36.44 21.52 15.45 0.000 BSMC IL-13 + TNF-

24 hr 35.94 21.41 15.07 0.000 BSMC IL-4 + IL-13 36.28 22.09 14.73 0.000 NHBE d0 36.63 22.24 14.92 0.000 NHBE IL-4 + TNF-

d0 35.72 21.42 14.83 0.000 NHBE IL-13 + TNF-

d0 36.35 21.37 15.52 0.000 NHBE resting d7 + d14 34.89 22.41 13.01 0.121 NHBE IL-4 + TNF-

d7 + d14 38.59 22.02 17.11 0.000 NHBE IL-13 + TNF-

d7 + d14 37.62 21.93 16.23 0.000 CD8 T cell O hour 30.15 19.52 11.16 0.437 CD8 T cell a-CD3/CD28 4 hour 32.08 19.6 13.01 0.121 CD8 T cell a-CD3/CD28 24 30.94 18.64 12.84 0.137 hour HMVEC resting 35.09 20.25 15.38 0.000 HMVEC TNF-

+ IL-4 24 hr 35.91 20.86 15.59 0.000 HMVEC TNF-

24 hr 35.57 21.06 15.05 0.000 HMVEC TNF-

+ IL-13 24 hr 36.38 20.61 16.31 0.000 Normal synovium pool 34.92 21.16 14.3 0.050 RA synovium pool 33.65 20.88 13.3 0.099 Normal colon 32.5 21.68 11.36 0.381 Colitis Colon 33.17 21.32 12.39 0.187 Crohns colon pooled 32.91 22.06 11.39 0.374 Normal Lung 31.01 20.5 11.05 0.472 COPD Lung 35.09 22.14 13.49 0.000 Positive control 28.4 22.29 6.64 9.992 Cloning of hDUB4, 8s by PCR

Following primer set was used to clone 530 amino acid open reading frame portion of single exon hDUB4s and 8s from human genomic DNA: N-terminal primer: 5′-atggaggacgactcactct-3′ (19 mer, Seq ID No.1) C-terminal primer: 5′-ctggcacacaagcaga-3′ (19 mer, Seq ID No.2)

Underlined triplet nucleotides in each primer represent translational initiation and termination codon. This primer set can amplify most of hDUB4s and hDUB8s as well as potentially yet to be identified hDUBs that are similar enough to hDUB4s and hDUB8s due to the high homology in nucleotide sequences in this part of the ORF. 1593 base pair fragment was successfully amplified from genomic DNA from two healthy human subjects and cloned into pCR2.1 vector and transformed into TOP10 strain of E. coli. Over 300 independent clones with appropriate size insert were obtained and sequences are obtained by ABI automated DNA sequencers.

Deubiqititination Assay

Confirmation that the DUB is a deubiquitinating enzyme may be shown using previously identified deubiquitination assay of ubiquitin—galactosidase fusion proteins, as described previously in the literature. Briefly, a fragment of the DUB, of approximately 1,500 nucleotides, based on the wild-type DUB cDNA (corresponding to amino acids 1 to about 500) and a cDNA containing a missense mutation are generated by PCR and inserted, in frame, into pGEX (Pharmacia), downstream of the glutathione S-transferase (GST) coding element. Ub-Met—gal is expressed from a pACYC184-based plasmid. Plasmids are co-transformed as indicated into MC 1061 Escherichia coli. Plasmid-bearing E. coli MC 1061 cells are lysed and analyzed by immunoblotting with a rabbit anti—gal antiserum (Cappel), arabbit anti-GST antiserum (Santa Cruz), and the ECL system (Amersham Corp.). in vitro deubiquitinating enzyme activity may be shown from purified hDUB fusion protein using commercial polyubiquitinated protein as substrate.

HDUB4s and hDUB8s are Potential Inflammatory Cytokines Specific Immediate-Early Genes

mDUB-1 was originally cloned as an IL-3-inducible immediate-early gene. Similarly, in DUB-2 was cloned as an IL-2-inducible immediate-early gene. We examined inducibility as well as cell-type specific expression of these genes using multiple TaqMan analysis from human organ RNA samples and human immunocytes RNA samples. Our data suggest that expression of hDUBs are not apparent in lymphocytes and granulocytes but high in fresh human PBMC from several donor. This strongly suggest that expression may be limited to the monocytes/macrophages and potentially NK cells. hDUB4s and hDUB8s are upregulated in PBMC stimulated with stimuli (LPS and/or PHA) that is known to upregulate various inflammatory cytokines such as TNF-alpha, IL-1 beta etc. This increase of expression is almost completely disappeared 20 to 24 hours after stimulation suggesting this is an early gene. The fact that there is only weak expression upregulation at 1.5 hours after stimulation suggests that stimuli by themselves may not upregulate hDUB4s and hDUB8s, but cytokines that are upregulated within couple of hours after stimulation may be responsible for upregulation of the hDUB4s and hDUB8s.

The DUB Subfamily of the ubp Superfamily

From these data we propose that hDUB4s and hDUB8s are members of a discrete subfamily of deubiquitinating enzymes that shows the strongest similarity to mDUB subfamily including mDUB1, mDUB2, and mDUB2A, called the DUB subfamily. DUB subfamily members contain distinct structural features that distinguish them from other ubps. First, DUB subfamily members are comparatively small enzymes of approximately 500-550 amino acids. Second, DUB subfamily members share amino acid similarity not only in the Cys and His domains but also throughout their primary amino acid sequence. For instance, DUB proteins contain a lysine-rich region (Lys domain) and a HV domain near their carboxyl terminus.

The regulatory regions, or promoter regions, of each of the DUBs was analyzed for putative transcription factor binding motifs using TRANSFACFind, a dynamic programming method, see Heinemeyer, T., et al., “Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms” Nucleic Acids Res. 27, 318-322, (1999). The Transfac database provides eukaryotic cis- and trans-acting regulatory elements. TABLE 6 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.1a. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00271 729 . . . 724(100) AML-1a runt-factor AML-1 M00148 296 . . . 302(100) SRY sex-determining region Y gene product 1016 . . . 1010(96) 958 . . . 964(94) 474 . . . 480(94) 1982 . . . 1988(92) 129 . . . 123(90) 857 . . . 863(90) 776 . . . 782(90) 1919 . . . 1913(90) 1227 . . . 1233(90) 276 . . . 282(90) 1741 . . . 1735(90) 193 . . . 199(90) 105 . . . 111(90) M00240 1600 . . . 1606(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 700 . . . 694(100) M00083 892 . . . 899(100) MZF1 MZF1 M00101 162 . . . 156(100) CdxA CdxA 1008 . . . 1002(100) 423 . . . 429(100) 153 . . . 147(99) 359 . . . 353(98) 1388 . . . 1394(98) 1644 . . . 1650(97) 1702 . . . 1696(97) 250 . . . 256(97) 231 . . . 237(97) 617 . . . 611(94) 509 . . . 503(93) 432 . . . 426(92) 307 . . . 313(92) 153 . . . 159(92) 1832 . . . 1838(92) 1366 . . . 1372(92) 494 . . . 500(92) 1450 . . . 1456(91) 1456 . . . 1450(91) 722 . . . 716(90) 991 . . . 985(90) 986 . . . 992(90) 1646 . . . 1640(90) M00253 1142 . . . 1149(97) cap cap signal for transcription initiation 1344 . . . 1351(96) 639 . . . 632(95) 1313 . . . 1320(94) 1872 . . . 1879(93) 269 . . . 262(92) 257 . . . 250(91) 1103 . . . 1110(91) 745 . . . 752(91) 1589 . . . 1596(90) M00099 978 . . . 993(96) S8 S8 1637 . . . 1652(94) 995 . . . 980(93) M00100 162 . . . 156(96) CdxA CdxA 1008 . . . 1002(96) 423 . . . 429(96) 1774 . . . 1768(96) 415 . . . 421(92) 860 . . . 854(91) 1026 . . . 1020(91) 494 . . . 500(91) 94 . . . 100(91) M00285 725 . . . 713(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 982 . . . 970(92) M00347 531 . . . 522(95) GATA-1 GATA-binding factor 1 M00135 1642 . . . 1660(95) Oct-1 octamer factor 1 M00075 217 . . . 226(94) GATA-1 GATA-binding factor 1 M00278 530 . . . 522(94) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 900 . . . 908(90) M00157 990 . . . 978(94) RORalpha2 RAR-related orphan receptor alpha2 M00127 533 . . . 520(93) GATA-1 GATA-binding factor 1 M00109 1933 . . . 1920(93) C/EBPbeta CCAAT/enhancer binding protein beta M00190 1656 . . . 1643(93) C/EBP CCAAT/enhancer binding factor M00137 1193 . . . 1205(93) Oct-1 octamer factor 1 248 . . . 260(90) 1652 . . . 1640(90) M00302 1501 . . . 1512(92) NF-AT Nuclear factor of activated T-cells M00077 900 . . . 908(91) GATA-3 GATA-binding factor 3 530 . . . 522(90) M00126 533 . . . 520(91) GATA-1 GATA-binding factor 1 M00159 1231 . . . 1219(91) C/EBP CCAAT/enhancer binding protein M00074 1280 . . . 1292(91) c-Ets-1(p54) c-Ets-1(p54) M00042 192 . . . 201(91) Sox-5 Sox-5 M00241 1650 . . . 1643(91) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00116 138 . . . 125(91) C/EBPalpha CCAAT/enhancer binding protein alpha M00138 1640 . . . 1662(91) Oct-1 octamer factor 1 M00128 532 . . . 520(90) GATA-1 GATA-binding factor 1 M00248 1645 . . . 1656(90) Oct-1 octamer factor 1 M00289 1009 . . . 1021(90) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6)

TABLE 7 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.1b. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00254 1831 . . . 1820(99) CCAAT cellular and viral CCAAT box M00101 832 . . . 826(98) CdxA CdxA 727 . . . 721(92) 70 . . . 64(92) 570 . . . 564(92) 523 . . . 529(92) 425 . . . 431(92) 1682 . . . 1688(91) 1409 . . . 1415(91) 1415 . . . 1409(91) 1688 . . . 1682(91) M00054 470 . . . 461(97) NF-kappaB NF-kappaB 643 . . . 634(95) MM00148 946 . . . 940(96) SRY sex-determining region Y gene product 1564 . . . 1570(92) 1528 . . . 1534(92) 1092 . . . 1098(92) 1048 . . . 1054(90) 708 . . . 714(90) 655 . . . 661(90) 1360 . . . 1354(90) 1824 . . . 1818(90) 396 . . . 390(90) 749 . . . 743(90) 1016 . . . 1010(90) 302 . . . 308(90) M00053 470 . . . 461(95) c-Rel c-Rel 643 . . . 634(94) M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1111 . . . 1123(91) 17 . . . 5(90) M00052 470 . . . 461(95) NF-kappaB NF-kappaB (p65) 643 . . . 634(94) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00253 485 . . . 492(95) cap cap signal for transcription initiation 1893 . . . 1886(95) 749 . . . 756(94) 834 . . . 841(93) 1484 . . . 1477(92) 511 . . . 504(92) 1194 . . . 1201(91) 163 . . . 170(91) 321 . . . 328(91) 340 . . . 347(91) 1815 . . . 1808(90) 563 . . . 570(90) M00096 652 . . . 660(95) Pbx-1 Pbx-1 M00194 472 . . . 459(95) NF-kappaB NF-kappaB M00209 1818 . . . 1831(94) NF-Y NF-Y binding site M00116 1238 . . . 1225(94) C/EBPalpha CCAAT/enhancer binding protein alpha M00203 1699 . . . 1689(94) GATA-X GATA binding site 1227 . . . 1217(90) M00241 535 . . . 542(94) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00033 759 . . . 746(94) p300 p300 333 . . . 320(90) M00127 1703 . . . 1690(93) GATA-1 GATA-binding factor 1 M00158 323 . . . 310(93) COUP-TF COUP/HNF-4 heterodimer M00075 1889 . . . 1898(93) GATA-1 GATA-binding factor 1 142 . . . 133(90) 1736 . . . 1745(90) M00286 963 . . . 976(93) GKLF gut-enriched Krueppel-like factor M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 983 . . . 992(92) M00208 471 . . . 460(93) NF-kappaB NF-kappaB binding site M00185 1829 . . . 1819(92) NF-Y nuclear factor Y (Y-box binding factor) M00302 232 . . . 243(92) NF-AT Nuclear factor of activated T-cells M00348 98 . . . 107(92) GATA-2 GATA-binding factor 2 M00134 308 . . . 326(92) HNF-4 hepatic nuclear factor 4 M00223 548 . . . 540(92) STATx signal transducers and activators of transcription M00039 1046 . . . 1039(92) CREB cAMP-responsive element binding protein M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00074 231 . . . 243(91) c-Ets-1(p54) c-Ets-1(p54) 252 . . . 264(91) M00289 385 . . . 397(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00199 1722 . . . 1714(91) AP-1 AP-1 binding site M00032 254 . . . 263(91) c-Ets-1(p54) c-Ets-1(p54) M00147 782 . . . 773(91) HSF2 heat shock factor 2 M00100 1101 . . . 1095(91) CdxA CdxA M00042 650 . . . 659(90) Sox-5 Sox-5 M00183 1026 . . . 1035(90) c-Myb c-Myb M00240 963 . . . 957(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1272 . . . 1266(90) M00190 1238 . . . 1225(90) C/EBP CCAAT/enhancer binding factor M00083 49 . . . 42(90) MZF1 MZF1 M00184 275 . . . 284(90) MyoD myoblast determining factor M00087 980 . . . 991(90) Ik-2 Ikaros 2 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00137 1388 . . . 1376(90) Oct-1 octamer factor 1

TABLE 8 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.2a. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 992 . . . 986(100) SRY sex-determining region Y gene product 942 . . . 948(100) 919 . . . 913(96) 1544 . . . 1550(92) 1505 . . . 1511(92) 815 . . . 809(90) 1068 . . . 1074(90) 1196 . . . 1190(90) 1337 . . . 1331(90) 680 . . . 686(90) 1697 . . . 1691(90) 1802 . . . 1796(90) 368 . . . 362(90) 721 . . . 715(90) 274 . . . 280(90) M00100 1077 . . . 1071(100) CdxA CdxA M00271 1933 . . . 1938(100) AML-1a runt-factor AML-1 2204 . . . 2209(92) M00101 1077 . . . 1071(99) CdxA CdxA 805 . . . 799(98) 699 . . . 693(92) 1384 . . . 1390(92) 936 . . . 942(92) 495 . . . 501(92) 1660 . . . 1666(91) 1666 . . . 1660(91) M00076 716 . . . 707(98) GATA-2 GATA-binding factor 2 1910 . . . 1919(95) 959 . . . 968(92) 1679 . . . 1670(91) M00285 1712 . . . 1724(96) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1087 . . . 1099(91) M00272 1242 . . . 1251(96) p53 tumor suppressor p53 M00253 135 . . . 142(96) cap cap signal for transcription initiation 457 . . . 464(95) 1871 . . . 1864(95) 721 . . . 728(94) 1461 . . . 1454(92) 312 . . . 319(92) 1989 . . . 1996(92) 1855 . . . 1848(91) 770 . . . 777(90) 1793 . . . 1786(90) 295 . . . 302(90) 1274 . . . 1281(90) M00106 627 . . . 636(95) CDP cut-like homeodomain protein 634 . . . 625(93) M00116 1215 . . . 1202(95) C/EBPalpha CCAAT/enhancer binding protein alpha M00254 1809 . . . 1798(95) CCAAT cellular and viral CCAAT box M00249 1117 . . . 1105(95) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00054 442 . . . 433(95) NF-kappaB NF-kappaB M00147 2182 . . . 2173(94) HSF2 heat shock factor 2 2173 . . . 2182(92) 754 . . . 745(91) 141 . . . 132(90) M00104 634 . . . 625(94) CDP cut-like homeodomain protein 2 . . . 11(92) M00134 280 . . . 298(94) HNF-4 hepatic nuclear factor 4 M00052 442 . . . 433(94) NF-kappaB NF-kappaB (p65) M00053 442 . . . 433(94) c-Rel c-Rel 785 . . . 794(90) M00033 731 . . . 718(94) p300 p300 M00158 295 . . . 282(93) COUP-TF COUP/HNF-4 heterodimer M00032 225 . . . 216(93) c-Ets-1(p54) c-Ets-1(p54) 226 . . . 235(93) M00172 1851 . . . 1861(92) AP-1 activator protein 1 M00223 520 . . . 512(92) STATx signal transducers and activators of transcription M00075 1679 . . . 1670(92) GATA-1 GATA-binding factor 1 1867 . . . 1876(91) 716 . . . 707(91) 316 . . . 307(90) M00184 1463 . . . 1472(91) MyoD myoblast determining factor 1472 . . . 1463(91) 247 . . . 256(90) 2057 . . . 2048(90) M00289 357 . . . 369(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00109 1202 . . . 1215(91) C/EBPbeta CCAAT/enhancer binding protein beta 2036 . . . 2023(90) M00268 937 . . . 950(91) XFD-2 Xenopus fork head domain factor 2 M00208 443 . . . 432(90) NF-kappaB NF-kappaB binding site M00173 1851 . . . 1861(90) AP-1 activator protein 1 M00183 1002 . . . 1011(90) c-Myb c-Myb 2020 . . . 2011(90) M00240 217 . . . 211(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00188 1851 . . . 1861(90) AP-1 activator protein 1 M00099 1086 . . . 1101(90) S8 S8 M00302 813 . . . 802(90) NF-AT Nuclear factor of activated T-cells M00083 21 . . . 14(90) MZF1 MZF1 M00190 1215 . . . 1202(90) C/EBP CCAAT/enhancer binding factor M00221 1838 . . . 1828(90) SREBP-1 sterol regulatory element-binding protein 1 M00294 949 . . . 937(90) HFH-8 HNF-3/Fkh Homolog-8 M00137 1365 . . . 1353(90) Oct-1 octamer factor 1 M00077 1911 . . . 1919(90) GATA-3 GATA-binding factor 3 M00194 444 . . . 431(90) NF-kappaB NF-kappaB

TABLE 9 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.2b. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00100 1102 . . . 1096(100) CdxA CdxA M00148 1017 . . . 1011(100) SRY sex-determining region Y gene product 967 . . . 973(100) 944 . . . 938(96) 1566 . . . 1572(92) 1530 . . . 1536(92) 840 . . . 834(90) 1093 . . . 1099(90) 705 . . . 711(90) 1362 . . . 1356(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 393 . . . 387(90) 746 . . . 740(90) 299 . . . 305(90) M00253 1120 . . . 1127(99) cap cap signal for transcription initiation 160 . . . 167(96) 482 . . . 489(95) 1893 . . . 1886(95) 746 . . . 753(94) 1486 . . . 1479(92) 337 . . . 344(92) 1877 . . . 1870(91) 795 . . . 802(90) 1815 . . . 1808(90) 320 . . . 327(90) 1299 . . . 1306(90) M00101 1102 . . . 1096(99) CdxA CdxA 830 . . . 824(98) 1231 . . . 1225(98) 1409 . . . 1415(92) 724 . . . 718(92) 520 . . . 526(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00076 741 . . . 732(98) GATA-2 GATA-binding factor 2 1932 . . . 1941(95) 984 . . . 993(92) 1701 . . . 1692(91) M00285 1734 . . . 1746(96) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1112 . . . 1124(91) M00272 1267 . . . 1276(96) p53 tumor suppressor p53 M00106 652 . . . 661(95) CDP cut-like homeodomain protein 659 . . . 650(93) M00116 1240 . . . 1227(95) C/EBPalpha CCAAT/enhancer binding protein alpha M00254 1831 . . . 1820(95) CCAAT cellular and viral CCAAT box M00249 1142 . . . 1130(95) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00054 467 . . . 458(95) NF-kappaB NF-kappaB M00104 659 . . . 650(94) CDP cut-like homeodomain protein 27 . . . 36(92) M00134 305 . . . 323(94) HNF-4 hepatic nuclear factor 4 M00052 467 . . . 458(94) NF-kappaB NF-kappaB (p65) M00053 467 . . . 458(94) c-Rel c-Rel M00033 756 . . . 743(94) p300 p300 M00158 320 . . . 307(93) COUP-TF COUP/HNF-4 heterodimer M00075 1889 . . . 1898(93) GATA-1 GATA-binding factor 1 1701 . . . 1692(92) 741 . . . 732(91) 341 . . . 332(90) 641 . . . 632(90) M00160 965 . . . 976(93) SRY sex-determining region Y gene product M00032 250 . . . 241(93) c-Ets- c-Ets-1(p54) 1(p54) 251 . . . 260(93) M00172 1873 . . . 1883(92) AP-1 activator protein 1 M00223 545 . . . 537(92) STATx signal transducers and activators of transcription M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00184 1488 . . . 1497(91) MyoD myoblast determining factor 1497 . . . 1488(91) 272 . . . 281(90) M00289 382 . . . 394(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00109 1227 . . . 1240(91) C/EBPbeta CCAAT/enhancer binding protein beta M00147 779 . . . 770(91) HSF2 heat shock factor 2 166 . . . 157(90) M00208 468 . . . 457(90) NF-kappaB NF-kappaB binding site M00183 1027 . . . 1036(90) c-Myb c-Myb M00173 1873 . . . 1883(90) AP-1 activator protein 1 M00240 242 . . . 236(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00188 1873 . . . 1883(90) AP-1 activator protein 1 M00302 838 . . . 827(90) NF-AT Nuclear factor of activated T-cells M00083 46 . . . 39(90) MZF1 MZF1 M00190 1240 . . . 1227(90) C/EBP CCAAT/enhancer binding factor M00096 1115 . . . 1123(90) Pbx-1 Pbx-1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00194 469 . . . 456(90) NF-kappaB NF-kappaB M00077 1933 . . . 1941(90) GATA-3 GATA-binding factor 3

TABLE 10 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.3. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 1015 . . . 1009(100) SRY sex-determining region Y gene product 965 . . . 971(100) 942 . . . 936(96) 1566 . . . 1572(92) 1528 . . . 1534(92) 838 . . . 832(90) 1091 . . . 1097(90) 1219 . . . 1213(90) 703 . . . 709(90) 1360 . . . 1354(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 391 . . . 385(90) 744 . . . 738(90) 297 . . . 303(90) M00100 1100 . . . 1094(100) CdxA CdxA M00101 1100 . . . 1094(99) CdxA CdxA 828 . . . 822(98) 1407 . . . 1413(92) 722 . . . 716(92) 959 . . . 965(92) 518 . . . 524(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00076 739 . . . 730(98) GATA-2 GATA-binding factor 2 1932 . . . 1941(95) 982 . . . 991(92) 1701 . . . 1692(91) M00285 1734 . . . 1746(96) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1110 . . . 1122(91) M00272 1265 . . . 1274(96) p53 tumor suppressor p53 M00253 158 . . . 165(96) cap cap signal for transcription initiation 480 . . . 487(95) 1893 . . . 1886(95) 744 . . . 751(94) 1484 . . . 1477(92) 335 . . . 342(92) 1877 . . . 1870(91) 793 . . . 800(90) 318 . . . 325(90) 1297 . . . 1304(90) M00106 650 . . . 659(95) CDP cut-like homeodomain protein 657 . . . 648(93) M00116 1238 . . . 1225(95) C/EBPalpha CCAAT/enhancer binding protein alpha M00254 1831 . . . 1820(95) CCAAT cellular and viral CCAAT box M00249 1140 . . . 1128(95) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00054 465 . . . 456(95) NF-kappaB NF-kappaB M00104 657 . . . 648(94) CDP cut-like homeodomain protein 25 . . . 34(92) M00134 303 . . . 321(94) HNF-4 hepatic nuclear factor 4 M00052 465 . . . 456(94) NF-kappaB NF-kappaB (p65) M00053 465 . . . 456(94) c-Rel c-Rel M00033 754 . . . 741(94) p300 p300 M00158 318 . . . 305(93) COUP-TF COUP/HNF-4 heterodimer M00075 1889 . . . 1898(93) GATA-1 GATA-binding factor 1 1701 . . . 1692(92) 739 . . . 730(91) 339 . . . 330(90) M00160 963 . . . 974(93) SRY sex-determining region Y gene product M00032 248 . . . 239(93) c-Ets- c-Ets-1(p54) 249 . . . 258(93) 1(p54) M00172 1873 . . . 1883(92) AP-1 activator protein 1 M00223 543 . . . 535(92) STATx signal transducers and activators of transcription M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00173 1873 . . . 1883(91) AP-1 activator protein 1 M00184 1486 . . . 1495(91) MyoD myoblast detennining factor 1495 . . . 1486(91) 270 . . . 279(90) M00289 380 . . . 392(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00109 1225 . . . 1238(91) C/EBPbeta CCAAT/enhancer binding protein beta M00147 777 . . . 768(91) HSF2 heat shock factor 2 164 . . . 155(90) M00208 466 . . . 455(90) NF-kappaB NF-kappaB binding site M00183 1025 . . . 1034(90) c-Myb c-Myb M00240 240 . . . 234(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00099 1109 . . . 1124(90) S8 S8 M00302 836 . . . 825(90) NF-AT Nuclear factor of activated T-cells M00083 44 . . . 37(90) MZF1 MZF1 M00190 1238 . . . 1225(90) C/EBP CCAAT/enhancer binding factor M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00174 1873 . . . 1883(90) AP-1 activator protein 1 M00077 1933 . . . 1941(90) GATA-3 GATA-binding factor 3 M00194 467 . . . 454(90) NF-kappaB NF-kappaB

TABLE 11 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.4. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00100 1101 . . . 1095(100) CdxA CdxA M00148 1016 . . . 1010(100) SRY sex-determining region Y gene product 966 . . . 972(100) 944 . . . 938(96) 1566 . . . 1572(92) 1529 . . . 1535(92) 840 . . . 834(90) 1092 . . . 1098(90) 705 . . . 711(90) 1361 . . . 1355(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 393 . . . 387(90) 746 . . . 740(90) 299 . . . 305(90) M00101 1101 . . . 1095(99) CdxA CdxA 830 . . . 824(98) 1230 . . . 1224(98) 1408 . . . 1414(92) 724 . . . 718(92) 520 . . . 526(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00076 741 . . . 732(98) GATA-2 GATA-binding factor 2 1932 . . . 1941(95) 983 . . . 992(92) 1701 . . . 1692(91) M00350 876 . . . 867(96) GATA-3 GATA-binding factor 3 M00285 1734 . . . 1746(96) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1111 . . . 1123(91) M00272 1266 . . . 1275(96) p53 tumor suppressor p53 M00253 160 . . . 167(96) cap cap signal for transcription initiation 482 . . . 489(95) 1893 . . . 1886(95) 746 . . . 753(94) 1485 . . . 1478(92) 337 . . . 344(92) 1877 . . . 1870(91) 795 . . . 802(90) 1815 . . . 1808(90) 320 . . . 327(90) 1298 . . . 1305(90) M00106 652 . . . 661(95) CDP cut-like homeodomain protein 659 . . . 650(93) M00116 1239 . . . 1226(95) C/EBPalpha CCAAT/enhancer binding protein alpha M00254 1831 . . . 1820(95) CCAAT cellular and viral CCAAT box M00249 1141 . . . 1129(95) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00349 876 . . . 867(95) GATA-2 GATA-binding factor 2 M00054 467 . . . 458(95) NF-kappaB NF-kappaB M00104 659 . . . 650(94) CDP cut-like homeodomain protein 27 . . . 36(92) M00134 305 . . . 323(94) HNF-4 hepatic nuclear factor 4 M00052 467 . . . 458(94) NF-kappaB NF-kappaB (p65) M00053 467 . . . 458(94) c-Rel c-Rel M00033 756 . . . 743(94) p300 p300 M00348 876 . . . 867(93) GATA-2 GATA-binding factor 2 M00158 320 . . . 307(93) COUP-TF COUP/HNF-4 heterodimer M00075 1889 . . . 1898(93) GATA-1 GATA-binding factor 1 1701 . . . 1692(92) 741 . . . 732(91) 341 . . . 332(90) M00160 964 . . . 975(93) SRY sex-determining region Y gene product M00347 876 . . . 867(93) GATA-1 GATA-binding factor 1 M00032 250 . . . 241(93) c-Ets-1(p54) c-Ets-1(p54) 251 . . . 260(93) M00172 1873 . . . 1883(92) AP-1 activator protein 1 M00223 545 . . . 537(92) STATx signal transducers and activators of transcription M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00184 1487 . . . 1496(91) MyoD myoblast determining factor 1496 . . . 1487(91) 272 . . . 281(90) M00289 382 . . . 394(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00109 1226 . . . 1239(91) C/EBPbeta CCAAT/enhancer binding protein beta M00208 468 . . . 457(90) NF-kappaB NF-kappaB binding site M00183 1026 . . . 1035(90) c-Myb c-Myb M00173 1873 . . . 1883(90) AP-1 activator protein 1 M00240 242 . . . 236(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00188 1873 . . . 1883(90) AP-1 activator protein 1 M00099 1110 . . . 1125(90) S8 S8 M00302 838 . . . 827(90) NF-AT Nuclear factor of activated T-cells M00083 46 . . . 39(90) MZF1 MZF1 M00190 1239 . . . 1226(90) C/EBP CCAAT/enhancer binding factor M00147 166 . . . 157(90) HSF2 heat shock factor 2 M00080 874 . . . 864(90) Evi-1 ectopic viral integration site 1 encoded factor M00082 874 . . . 864(90) Evi-1 ectopic viral integration site 1 encoded factor M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00194 469 . . . 456(90) NF-kappaB NF-kappaB M00077 1933 . . . 1941(90) GATA-3 GATA-binding factor 3

TABLE 12 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 4.5. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 963 . . . 969(100) SRY sex-determining region Y gene product 1013 . . . 1007(100) 940 . . . 934(96) 1526 . . . 1532(92) 1089 . . . 1095(90) 836 . . . 830(90) 701 . . . 707(90) 1358 . . . 1352(90) 1720 . . . 1714(90) 1825 . . . 1819(90) 389 . . . 383(90) 742 . . . 736(90) 295 . . . 301(90) M00100 1098 . . . 1092(100) CdxA CdxA M00101 1098 . . . 1092(99) CdxA CdxA 826 . . . 820(98) 1405 . . . 1411(92) 720 . . . 714(92) 957 . . . 963(92) 516 . . . 522(92) 1683 . . . 1689(91) 1689 . . . 1683(91) M00076 737 . . . 728(98) GATA-2 GATA-binding factor 2 980 . . . 989(92) 1702 . . . 1693(91) 1299 . . . 1308(90) M00285 1735 . . . 1747(96) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1108 . . . 1120(91) M00272 1263 . . . 1272(96) p53 tumor suppressor p53 M00253 156 . . . 163(96) cap cap signal for transcription initiation 478 . . . 485(95) 742 . . . 749(94) 1482 . . . 1475(92) 333 . . . 340(92) 791 . . . 798(90) 1816 . . . 1809(90) 316 . . . 323(90) M00106 648 . . . 657(95) CDP cut-like homeodomain protein 655 . . . 646(93) M00116 1236 . . . 1223(95) C/EBPalpha CCAAT/enhancer binding protein alpha M00254 1832 . . . 1821(95) CCAAT cellular and viral CCAAT box M00249 1138 . . . 1126(95) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00054 463 . . . 454(95) NF-kappaB NF-kappaB M00183 1493 . . . 1484(94) c-Myb c-Myb 1023 . . . 1032(90) M00104 655 . . . 646(94) CDP cut-like homeodomain protein 23 . . . 32(92) M00134 301 . . . 319(94) HNF-4 hepatic nuclear factor 4 M00052 463 . . . 454(94) NF-kappaB NF-kappaB (p65) M00053 463 . . . 454(94) c-Rel c-Rel 806 . . . 815(90) M00033 752 . . . 739(94) p300 p300 M00158 316 . . . 303(93) COUP-TF COUP/HNF-4 heterodimer M00032 246 . . . 237(93) c-Ets- c-Ets-1(p54) 247 . . . 256(93) 1(p54) M00278 1300 . . . 1308(92) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00223 541 . . . 533(92) STATx signal transducers and activators of transcription M00075 1702 . . . 1693(92) GATA-1 GATA-binding factor 1 737 . . . 728(91) 337 . . . 328(90) M00077 1300 . . . 1308(91) GATA-3 GATA-binding factor 3 M00289 378 . . . 390(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00109 1223 . . . 1236(91) C/EBPbeta CCAAT/enhancer binding protein beta M00268 958 . . . 971(91) XFD-2 Xenopus fork head domain factor 2 M00147 775 . . . 766(91) HSF2 heat shock factor 2 162 . . . 153(90) M00208 464 . . . 453(90) NF-kappaB NF-kappaB binding site M00240 238 . . . 232(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00099 1107 . . . 1122(90) S8 S8 M00302 834 . . . 823(90) NF-AT Nuclear factor of activated T-cells M00083 42 . . . 35(90) MZF1 MZF1 M00184 268 . . . 277(90) MyoD myoblast determining factor M00190 1236 . . . 1223(90) C/EBP CCAAT/enhancer binding factor M00221 1861 . . . 1851(90) SREBP-1 sterol regulatory element-binding protein 1 M00294 970 . . . 958(90) HFH-8 HNF-3/Fkh Homolog-8 M00137 1386 . . . 1374(90) Oct-1 octamer factor 1 M00194 465 . . . 452(90) NF-kappaB NF-kappaB

TABLE 13 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.1. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 1015 . . . 1009(100) SRY sex-determining region Y gene product 965 . . . 971(100) 942 . . . 936(96) 1544 . . . 1550(92) 838 . . . 832(90) 702 . . . 708(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 390 . . . 384(90) 1384 . . . 1390(90) 1356 . . . 1350(90) 296 . . . 302(90) 63 . . . 69(90) M00100 1100 . . . 1094(100) CdxA CdxA 724 . . . 730(96) 1547 . . . 1541(91) M00349 93 . . . 102(100) GATA-2 GATA-binding factor 2 M00350 93 . . . 102(100) GATA-3 GATA-binding factor 3 M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00348 93 . . . 102(100) GATA-2 GATA-binding factor 2 M00101 1100 . . . 1094(99) CdxA CdxA 828 . . . 822(98) 1229 . . . 1223(98) 1203 . . . 1209(94) 721 . . . 715(92) 959 . . . 965(92) 1386 . . . 1380(92) 65 . . . 59(92) 517 . . . 523(92) 419 . . . 425(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00203 95 . . . 105(98) GATA-X GATA binding site M00347 93 . . . 102(97) GATA-1 GATA-binding factor 1 M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 1701 . . . 1692(95) 137 . . . 128(92) 1483 . . . 1492(92) 1889 . . . 1898(91) 1736 . . . 1745(90) M00158 317 . . . 304(96) COUP- COUP/HNF-4 heterodimer TF M00253 158 . . . 165(96) cap cap signal for transcription initiation 1794 . . . 1801(95) 479 . . . 486(95) 1297 . . . 1304(93) 337 . . . 344(93) 48 . . . 55(93) 1484 . . . 1477(92) 1324 . . . 1317(91) 557 . . . 564(91) 1893 . . . 1886(91) 1877 . . . 1870(91) 793 . . . 800(90) 1356 . . . 1363(90) 1815 . . . 1808(90) 317 . . . 324(90) M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1110 . . . 1122(91) 13 . . . 1(90) M00134 302 . . . 320(95) HNF-4 hepatic nuclear factor 4 M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00096 1827 . . . 1819(95) Pbx-1 Pbx-1 M00141 451 . . . 459(94) Lyf-1 LyF-1 M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00076 1483 . . . 1492(93) GATA-2 GATA-binding factor 2 1932 . . . 1941(93) 1701 . . . 1692(92) 982 . . . 991(92) M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00099 1813 . . . 1798(92) S8 S8 1109 . . . 1124(90) M00294 1551 . . . 1539(92) HFH-8 HNF-3/Fkh Homolog-8 M00223 542 . . . 534(92) STATx signal transducers and activators of transcription M00073 36 . . . 46(92) deltaEF1 deltaEF1 M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 132 . . . 127(92) M00137 335 . . . 323(91) Oct-1 octamer factor 1 M00042 644 . . . 653(91) Sox-5 Sox-5 1829 . . . 1820(90) M00289 379 . . . 391(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00183 1025 . . . 1034(90) c-Myb c-Myb M00240 239 . . . 233(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00302 836 . . . 825(90) NF-AT Nuclear factor of activated T-cells M00128 92 . . . 104(90) GATA-1 GATA-binding factor 1 M00184 269 . . . 278(90) MyoD myoblast determining factor M00147 164 . . . 155(90) HSF2 heat shock factor 2 M00087 979 . . . 990(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1

TABLE 14 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.2. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00241 1804 . . . 1811(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00240 556 . . . 562(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1354 . . . 1360(90) 301 . . . 307(90) M00096 1342 . . . 1350(100) Pbx-1 Pbx-1 1831 . . . 1823(96) M00271 702 . . . 707(100) AML-1a runt-factor AML-1 1955 . . . 1960(92) 170 . . . 175(92) M00050 104 . . . 111(100) E2F E2F M00148 1271 . . . 1277(100) SRY sex-determining region Y gene product 1572 . . . 1578(92) 1345 . . . 1351(90) 1719 . . . 1713(90) 1828 . . . 1822(90) 1634 . . . 1628(90) M00272 472 . . . 463(97) p53 tumor suppressor p53 463 . . . 472(97) 295 . . . 286(91) M00075 1842 . . . 1851(97) GATA-1 GATA-binding factor 1 1893 . . . 1902(93) 1380 . . . 1371(92) 1740 . . . 1749(90) M00253 1072 . . . 1065(96) cap cap signal for transcription initiation 1798 . . . 1805(95) 1897 . . . 1890(95) 769 . . . 776(92) 1701 . . . 1708(92) 1881 . . . 1874(91) 497 . . . 504(90) 1819 . . . 1812(90) 21 . . . 28(90) M00285 1738 . . . 1750(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 366 . . . 378(93) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00147 148 . . . 139(94) HSF2 heat shock factor 2 139 . . . 148(92) M00199 1801 . . . 1793(94) AP-1 AP-1 binding site 1037 . . . 1029(94) 1793 . . . 1801(91) 1029 . . . 1037(90) M00174 1792 . . . 1802(94) AP-1 activator protein 1 1038 . . . 1028(92) M00074 1247 . . . 1259(93) c-Ets- c-Ets-1(p54) 1(p54) M00211 702 . . . 710(93) Poly Retroviral Poly A downstream element 1531 . . . 1539(91) M00124 1339 . . . 1353(93) Pbx1b homeo domain factor Pbx-1 M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00052 1261 . . . 1252(93) NF- NF-kappaB (p65) kappaB M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 837 . . . 828(90) M00099 1817 . . . 1802(92) S8 S8 M00101 987 . . . 981(92) CdxA CdxA M00042 1635 . . . 1626(92) Sox-5 Sox-5 M00254 1835 . . . 1824(91) CCAAT cellular and viral CCAAT box M00008 252 . . . 243(91) Sp1 stimulating protein 1 1323 . . . 1314(91) M00227 933 . . . 941(90) v-Myb v-Myb M00141 1328 . . . 1320(90) Lyf-1 LyF-1 M00183 1033 . . . 1042(90) c-Myb c-Myb M00001 654 . . . 665(90) MyoD myoblast determination gene product M00188 1792 . . . 1802(90) AP-1 activator protein 1 M00184 23 . . . 14(90) MyoD myoblast determining factor M00172 1792 . . . 1802(90) AP-1 activator protein 1 M00221 1864 . . . 1854(90) SREBP-1 sterol regulatory element-binding protein 1 M00037 871 . . . 861(90) NF-E2 NF-E2 p45 M00053 1261 . . . 1252(90) c-Rel c-Rel M00249 823 . . . 835(90) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00302 1248 . . . 1259(90) NF-AT Nuclear factor of activated T-cells

TABLE 15 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.3. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00348 71 . . . 80(100) GATA-2 GATA-binding factor 2 M00349 71 . . . 80(100) GATA-2 GATA-binding factor 2 M00148 990 . . . 984(100) SRY sex-determining region Y gene product 1654 . . . 1648(100) 813 . . . 807(96) 917 . . . 911(96) 1848 . . . 1854(92) 1840 . . . 1846(92) 1826 . . . 1832(92) 1504 . . . 1498(92) 1391 . . . 1397(90) 680 . . . 686(90) 2094 . . . 2088(90) 368 . . . 362(90) 721 . . . 715(90) 1002 . . . 996(90) 1900 . . . 1894(90) 274 . . . 280(90) M00350 71 . . . 80(100) GATA-3 GATA-binding factor 3 M00100 595 . . . 589(100) CdxA CdxA 1400 . . . 1394(100) M00101 595 . . . 589(99) CdxA CdxA 1400 . . . 1394(99) 803 . . . 797(98) 1527 . . . 1521(98) 1705 . . . 1711(92) 699 . . . 693(92) 934 . . . 940(92) 43 . . . 37(92) 495 . . . 501(92) 397 . . . 403(92) M00141 1274 . . . 1266(98) Lyf-1 LyF-1 M00347 71 . . . 80(97) GATA-1 GATA-binding factor 1 M00272 1563 . . . 1572(96) p53 tumor suppressor p53 M00253 1128 . . . 1135(96) cap cap signal for transcription initiation 136 . . . 143(96) 2064 . . . 2071(95) 457 . . . 464(95) 2163 . . . 2156(95) 721 . . . 728(94) 660 . . . 653(94) 1782 . . . 1775(92) 312 . . . 319(92) 1622 . . . 1615(91) 535 . . . 542(91) 2085 . . . 2078(91) 2147 . . . 2140(91) 1350 . . . 1357(91) 768 . . . 775(90) 295 . . . 302(90) M00285 2004 . . . 2016(95) TCF11 TCF11/KCR-F1/Nrfl homodimers 1410 . . . 1422(91) M00254 2101 . . . 2090(95) CCAAT cellular and viral CCAAT box M00130 1647 . . . 1658(95) HFH-2 HNF-3/Fkh Homolog 2 M00054 442 . . . 433(95) NF-kappaB NF-kappaB M00077 2203 . . . 2211(95) GATA-3 GATA-binding factor 3 M00052 442 . . . 433(94) NF-kappaB NF-kappaB (p65) M00203 73 . . . 83(94) GATA-X GATA binding site M00199 2067 . . . 2059(94) AP-1 AP-1 binding site 2059 . . . 2067(91) 1984 . . . 1992(90) M00174 2058 . . . 2068(94) AP-1 activator protein 1 M00075 895 . . . 886(94) GATA-1 GATA-binding factor 1 2159 . . . 2168(93) 1082 . . . 1073(93) 1971 . . . 1962(92) 2006 . . . 2015(90) M00053 442 . . . 433(94) c-Rel c-Rel M00241 2070 . . . 2077(94) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00076 716 . . . 707(94) GATA-2 GATA-binding factor 2 1599 . . . 1608(92) 957 . . . 966(92) 895 . . . 886(91) 1971 . . . 1962(91) M00106 627 . . . 636(94) CDP cut-like homeodomain protein M00033 731 . . . 718(94) p300 p300 M00227 2139 . . . 2131(94) v-Myb v-Myb M00158 295 . . . 282(93) COUP-TF COUP/HNF-4 heterodimer M00162 2070 . . . 2083(93) Oct-1 octamer-binding factor 1 M00134 280 . . . 298(93) HNF-4 hepatic nuclear factor 4 M00032 226 . . . 235(93) c-Ets-1(p54) c-Ets-1(p54) M00117 1080 . . . 1067(92) C/EBPbeta CCAAT/enhancer binding protein beta M00223 520 . . . 512(92) STATx signal transducers and activators of transcription M00042 1901 . . . 1892(92) Sox-5 Sox-5 622 . . . 631(91) M00073 13 . . . 23(92) deltaEF1 deltaEF1 M00099 2083 . . . 2068(91) S8 S8 2066 . . . 2081(90) 1409 . . . 1424(90) M00289 1647 . . . 1659(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) 357 . . . 369(91) M00147 752 . . . 743(91) HSF2 heat shock factor 2 142 . . . 133(90) M00208 443 . . . 432(90) NF-kappaB NF-kappaB binding site M00217 115 . . . 108(90) USF USF binding site M00183 1325 . . . 1334(90) c-Myb c-Myb M00240 217 . . . 211(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00188 2058 . . . 2068(90) AP-1 activator protein 1 M00184 1955 . . . 1964(90) MyoD myoblast determining factor 247 . . . 256(90) M00087 954 . . . 965(90) Ik-2 Ikaros 2 M00128 70 . . . 82(90) GATA-1 GATA-binding factor 1 M00172 2058 . . . 2068(90) AP-1 activator protein 1 M00145 1339 . . . 1354(90) Brn-2 POU factor Brn-2 M00062 1217 . . . 1205(90) IRF-1 interferon regulatory factor 1 M00194 444 . . . 431(90) NF-kappaB NF-kappaB

TABLE 16 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.4. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00100 1105 . . . 1099(100) CdxA CdxA M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00148 1020 . . . 1014(100) SRY sex-determining region Y gene product 970 . . . 976(100) 947 . . . 941(96) 1550 . . . 1556(92) 843 . . . 837(90) 707 . . . 713(90) 1362 . . . 1356(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 395 . . . 389(90) 748 . . . 742(90) 300 . . . 306(90) M00101 1105 . . . 1099(99) CdxA CdxA 833 . . . 827(98) 1385 . . . 1379(98) 1409 . . . 1415(92) 964 . . . 970(92) 726 . . . 720(92) 424 . . . 430(92) M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 1889 . . . 1898(93) 925 . . . 916(93) 1736 . . . 1745(90) M00272 1267 . . . 1276(96) p53 tumor suppressor p53 M00253 161 . . . 168(96) cap cap signal for transcription initiation 1794 . . . 1801(95) 484 . . . 491(95) 1893 . . . 1886(95) 1452 . . . 1459(94) 798 . . . 805(94) 748 . . . 755(94) 957 . . . 964(94) 1486 . . . 1479(92) 338 . . . 345(92) 1697 . . . 1704(92) 562 . . . 569(91) 1877 . . . 1870(91) 1815 . . . 1808(90) 321 . . . 328(90) 1326 . . . 1319(90) 1299 . . . 1306(90) M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrfl homodimers 1115 . . . 1127(91) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00054 469 . . . 460(95) NF-kappaB NF-kappaB M00141 456 . . . 464(94) Lyf-1 LyF-1 M00134 306 . . . 324(94) HNF-4 hepatic nuclear factor 4 M00052 469 . . . 460(94) NF-kappaB NF-kappaB (p65) M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00053 469 . . . 460(94) c-Rel c-Rel M00033 758 . . . 745(94) p300 p300 808 . . . 795(92) M00158 321 . . . 308(93) COUP-TF COUP/HNF-4 heterodimer M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 1303 . . . 1312(92) 743 . . . 734(92) 987 . . . 996(92) 925 . . . 916(90) M00099 1813 . . . 1798(92) S8 S8 1114 . . . 1129(90) M00104 28 . . . 37(92) CDP cut-like homeodomain protein M00223 547 . . . 539(92) STATx signal transducers and activators of transcription M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00042 649 . . . 658(91) Sox-5 Sox-5 M00289 384 . . . 396(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00302 1384 . . . 1395(91) NF-AT Nuclear factor of activated T-cells 841 . . . 830(90) M00155 367 . . . 382(91) ARP-1 apolipoprotein AI regulatory protein 1 M00208 470 . . . 459(90) NF-kappaB NF-kappaB binding site M00183 1030 . . . 1039(90) c-Myb c-Myb M00240 243 . . . 237(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1454 . . . 1448(90) M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00083 47 . . . 40(90) MZF1 MZF1 M00184 273 . . . 282(90) MyoD myoblast determining factor M00147 167 . . . 158(90) HSF2 heat shock factor 2 M00087 984 . . . 995(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00194 471 . . . 458(90) NF-kappaB NF-kappaB

TABLE 17 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.5. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00100 1105 . . . 1099(100) CdxA CdxA M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00271 27 . . . 32(100) AML-1a runt-factor AML-1 1955 . . . 1960(92) M00148 1020 . . . 1014(100) SRY sex-determining region Y gene product 970 . . . 976(100) 947 . . . 941(96) 1553 . . . 1559(92) 100 . . . 106(92) 141 . . . 135(90) 843 . . . 837(90) 1365 . . . 1359(90) 1719 . . . 1713(90) 1824 . . . 1818(90) M00101 1105 . . . 1099(99) CdxA CdxA 833 . . . 827(98) 1234 . . . 1228(98) 1388 . . . 1382(98) 1300 . . . 1294(93) 1412 . . . 1418(92) 964 . . . 970(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00278 618 . . . 610(98) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 1933 . . . 1941(93) M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 619 . . . 610(97) 1701 . . . 1692(95) 1889 . . . 1898(93) 903 . . . 894(91) 1736 . . . 1745(90) M00054 442 . . . 451(96) NF- NF-kappaB 451 . . . 442(91) kappaB M00253 175 . . . 168(96) cap cap signal for transcription initiation 1794 . . . 1801(95) 1893 . . . 1886(95) 1455 . . . 1462(94) 798 . . . 805(94) 629 . . . 636(94) 1489 . . . 1482(92) 433 . . . 426(92) 1329 . . . 1322(91) 1877 . . . 1870(91) 921 . . . 928(91) 957 . . . 964(90) 1815 . . . 1808(90) 1302 . . . 1309(90) M00272 1270 . . . 1279(96) p53 tumor suppressor p53 M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1115 . . . 1127(91) 1490 . . . 1478(91) M00076 619 . . . 610(95) GATA-2 GATA-binding factor 2 1932 . . . 1941(93) 1701 . . . 1692(92) 1306 . . . 1315(92) 987 . . . 996(92) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 618 . . . 610(92) M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00083 566 . . . 559(93) MZF1 MZF1 M00099 1813 . . . 1798(92) S8 S8 1114 . . . 1129(90) M00208 441 . . . 452(92) NF- NF-kappaB binding site kappaB M00033 808 . . . 795(92) p300 p300 M00227 1677 . . . 1669(91) v-Myb v-Myb M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00183 166 . . . 157(91) c-Myb c-Myb 1030 . . . 1039(90) M00267 102 . . . 89(91) XFD-1 Xenopus fork head domain factor 1 M00240 1457 . . . 1451(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 296 . . . 302(90) M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00302 841 . . . 830(90) NF-AT Nuclear factor of activated T-cells M00087 984 . . . 995(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00003 965 . . . 956(90) v-Myb v-Myb M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00053 441 . . . 450(90) c-Rel c-Rel

TABLE 18 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.6. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00100 1105 . . . 1099(100) CdxA CdxA M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00148 1020 . . . 1014(100) SRY sex-determining region Y gene product 970 . . . 976(100) 947 . . . 941(96) 1550 . . . 1556(92) 843 . . . 837(90) 707 . . . 713(90) 1362 . . . 1356(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 395 . . . 389(90) 748 . . . 742(90) 300 . . . 306(90) M00101 1105 . . . 1099(99) CdxA CdxA 833 . . . 827(98) 1385 . . . 1379(98) 1409 . . . 1415(92) 964 . . . 970(92) 726 . . . 720(92) 424 . . . 430(92) M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 1889 . . . 1898(93) 925 . . . 916(93) 1736 . . . 1745(90) M00272 1267 . . . 1276(96) p53 tumor suppressor p53 M00253 161 . . . 168(96) cap cap signal for transcription initiation 1794 . . . 1801(95) 484 . . . 491(95) 1893 . . . 1886(95) 1452 . . . 1459(94) 798 . . . 805(94) 748 . . . 755(94) 957 . . . 964(94) 1486 . . . 1479(92) 338 . . . 345(92) 1697 . . . 1704(92) 562 . . . 569(91) 1877 . . . 1870(91) 1815 . . . 1808(90) 321 . . . 328(90) 1326 . . . 1319(90) 1299 . . . 1306(90) M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1115 . . . 1127(91) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00054 469 . . . 460(95) NF-kappaB NF-kappaB M00141 456 . . . 464(94) Lyf-1 LyF-1 M00134 306 . . . 324(94) HNF-4 hepatic nuclear factor 4 M00052 469 . . . 460(94) NF-kappaB NF-kappaB (p65) M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00053 469 . . . 460(94) c-Rel c-Rel M00033 758 . . . 745(94) p300 p300 808 . . . 795(92) M00158 321 . . . 308(93) COUP-TF COUP/HNF-4 heterodimer M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 1303 . . . 1312(92) 743 . . . 734(92) 987 . . . 996(92) 925 . . . 916(90) M00099 1813 . . . 1798(92) S8 S8 1114 . . . 1129(90) M00104 28 . . . 37(92) CDP cut-like homeodomain protein M00223 547 . . . 539(92) STATx signal transducers and activators of transcription M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00042 649 . . . 658(91) Sox-5 Sox-5 M00289 384 . . . 396(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00302 1384 . . . 1395(91) NF-AT Nuclear factor of activated T-cells 841 . . . 830(90) M00155 367 . . . 382(91) ARP-1 apolipoprotein AI regulatory protein 1 M00208 470 . . . 459(90) NF-kappaB NF-kappaB binding site M00183 1030 . . . 1039(90) c-Myb c-Myb M00240 243 . . . 237(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1454 . . . 1448(90) M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00083 47 . . . 40(90) MZF1 MZF1 M00184 273 . . . 282(90) MyoD myoblast determining factor M00147 167 . . . 158(90) HSF2 heat shock factor 2 M00087 984 . . . 995(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00194 471 . . . 458(90) NF-kappaB NF-kappaB

TABLE 19 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.7. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00349 94 . . . 103(100) GATA-2 GATA-binding factor 2 M00348 94 . . . 103(100) GATA-2 GATA-binding factor 2 M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00100 1102 . . . 1096(100) CdxA CdxA M00148 1017 . . . 1011(100) SRY sex-determining region Y gene product 967 . . . 973(100) 704 . . . 710(100) 944 . . . 938(96) 1550 . . . 1556(92) 840 . . . 834(90) 1362 . . . 1356(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 392 . . . 386(90) 745 . . . 739(90) 298 . . . 304(90) M00350 94 . . . 103(100) GATA-3 GATA-binding factor 3 M00101 1102 . . . 1096(99) CdxA CdxA 830 . . . 824(98) 1231 . . . 1225(98) 1385 . . . 1379(98) 1297 . . . 1291(93) 1409 . . . 1415(92) 723 . . . 717(92) 961 . . . 967(92) 66 . . . 60(92) 421 . . . 427(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00203 96 . . . 106(98) GATA-X GATA binding site M00347 94 . . . 103(97) GATA-1 GATA-binding factor 1 M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 1701 . . . 1692(95) 1889 . . . 1898(93) 900 . . . 891(91) 138 . . . 129(90) 1736 . . . 1745(90) M00158 319 . . . 306(96) COUP-TF COUP/HNF-4 heterodimer M00272 1267 . . . 1276(96) p53 tumor suppressor p53 M00134 304 . . . 322(96) HNF-4 hepatic nuclear factor 4 M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1112 . . . 1124(91) 1487 . . . 1475(91) 13 . . . 1(90) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00253 1794 . . . 1801(95) cap cap signal for transcription initiation 481 . . . 488(95) 1893 . . . 1886(95) 1452 . . . 1459(94) 795 . . . 802(94) 656 . . . 649(93) 1486 . . . 1479(92) 1326 . . . 1319(91) 559 . . . 566(91) 1877 . . . 1870(91) 745 . . . 752(91) 918 . . . 925(91) 954 . . . 961(90) 1815 . . . 1808(90) 1299 . . . 1306(90) M00054 466 . . . 457(95) NF-kappaB NF-kappaB M00146 165 . . . 156(94) HSF1 heat shock factor 1 M00147 165 . . . 156(94) HSF2 heat shock factor 2 156 . . . 165(94) M00141 453 . . . 461(94) Lyf-1 LyF-1 M00052 466 . . . 457(94) NF-kappaB NF-kappaB (p65) M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00053 466 . . . 457(94) c-Rel c-Rel M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 1701 . . . 1692(92) 1303 . . . 1312(92) 984 . . . 993(92) M00099 1813 . . . 1798(92) S8 S8 1111 . . . 1126(90) M00184 271 . . . 280(92) MyoD myoblast determining factor M00223 544 . . . 536(92) STATx signal transducers and activators of transcription M00073 36 . . . 46(92) deltaEF1 deltaEF1 M00033 805 . . . 792(92) p300 p300 M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00277 281 . . . 270(91) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 1 M00289 381 . . . 393(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00208 467 . . . 456(90) NF-kappaB NF-kappaB binding site M00183 1027 . . . 1036(90) c-Myb c-Myb M00240 241 . . . 235(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1454 . . . 1448(90) M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00302 838 . . . 827(90) NF-AT Nuclear factor of activated T-cells M00128 93 . . . 105(90) GATA-1 GATA-binding factor 1 M00087 981 . . . 992(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00042 69 . . . 78(90) Sox-5 Sox-5 M00003 962 . . . 953(90) v-Myb v-Myb M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00194 468 . . . 455(90) NF-kappaB NF-kappaB

TABLE 20 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.8. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 1020 . . . 1014(100) SRY sex-determining region Y gene product 970 . . . 976(100) 947 . . . 941(96) 1550 . . . 1556(92) 843 . . . 837(90) 707 . . . 713(90) 1362 . . . 1356(90) 1719 . . . 1713(90) 1824 . . . 1818(90) 395 . . . 389(90) 748 . . . 742(90) 300 . . . 306(90) M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00100 1105 . . . 1099(100) CdxA CdxA M00101 1105 . . . 1099(99) CdxA CdxA 833 . . . 827(98) 1385 . . . 1379(98) 1409 . . . 1415(92) 964 . . . 970(92) 726 . . . 720(92) 424 . . . 430(92) M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 1889 . . . 1898(93) 925 . . . 916(93) 1736 . . . 1745(90) M00272 1267 . . . 1276(96) p53 tumor suppressor p53 M00253 161 . . . 168(96) cap cap signal for transcription initiation 1794 . . . 1801(95) 484 . . . 491(95) 1893 . . . 1886(95) 1452 . . . 1459(94) 798 . . . 805(94) 748 . . . 755(94) 957 . . . 964(94) 1486 . . . 1479(92) 338 . . . 345(92) 1697 . . . 1704(92) 562 . . . 569(91) 1877 . . . 1870(91) 1815 . . . 1808(90) 321 . . . 328(90) 1326 . . . 1319(90) 1299 . . . 1306(90) M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1115 . . . 1127(91) M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00054 469 . . . 460(95) NF-kappaB NF-kappaB M00141 456 . . . 464(94) Lyf-1 LyF-1 M00134 306 . . . 324(94) HNF-4 hepatic nuclear factor 4 M00052 469 . . . 460(94) NF-kappaB NF-kappaB (p65) M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00053 469 . . . 460(94) c-Rel c-Rel M00033 758 . . . 745(94) p300 p300 808 . . . 795(92) M00158 321 . . . 308(93) COUP-TF COUP/HNF-4 heterodimer M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 1303 . . . 1312(92) 743 . . . 734(92) 925 . . . 916(90) M00099 1813 . . . 1798(92) S8 S8 1114 . . . 1129(90) M00104 28 . . . 37(92) CDP cut-like homeodomain protein M00223 547 . . . 539(92) STATx signal transducers and activators of transcription M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00042 649 . . . 658(91) Sox-5 Sox-5 M00289 384 . . . 396(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00302 1384 . . . 1395(91) NF-AT Nuclear factor of activated T-cells 841 . . . 830(90) M00155 367 . . . 382(91) ARP-1 apolipoprotein AI regulatory protein 1 M00208 470 . . . 459(90) NF-kappaB NF-kappaB binding site M00183 1030 . . . 1039(90) c-Myb c-Myb M00240 243 . . . 237(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1454 . . . 1448(90) M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00083 47 . . . 40(90) MZF1 MZF1 M00184 273 . . . 282(90) MyoD myoblast determining factor M00147 167 . . . 158(90) HSF2 heat shock factor 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00194 471 . . . 458(90) NF-kappaB NF-kappaB

TABLE 21 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.9. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 991 . . . 997(100) SRY sex-determining region Y gene product 1040 . . . 1034(100) 967 . . . 961(96) 1576 . . . 1582(92) 1550 . . . 1556(92) 1385 . . . 1379(90) 1824 . . . 1818(90) 13 . . . 19(90) 415 . . . 409(90) 727 . . . 733(90) M00101 1125 . . . 1119(100) CdxA CdxA 1254 . . . 1248(98) 1167 . . . 1161(97) 542 . . . 548(97) 884 . . . 878(94) 1432 . . . 1438(93) 743 . . . 737(92) 89 . . . 83(92) 592 . . . 586(92) 1280 . . . 1286(92) 444 . . . 450(92) 1682 . . . 1688(91) 1688 . . . 1682(91) M00083 779 . . . 772(100) MZF1 MZF1 68 . . . 61(90) M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00272 1290 . . . 1299(96) p53 tumor suppressor p53 M00253 182 . . . 189(96) cap cap signal for transcription initiation 1794 . . . 1801(95) 1893 . . . 1886(95) 1475 . . . 1482(94) 768 . . . 775(94) 1506 . . . 1499(93) 1349 . . . 1342(91) 582 . . . 589(91) 351 . . . 358(90) 1815 . . . 1808(90) 342 . . . 349(90) 1877 . . . 1870(90) 504 . . . 511(90) 1322 . . . 1329(90) M00100 1125 . . . 1119(96) CdxA CdxA M00042 742 . . . 751(96) Sox-5 Sox-5 669 . . . 678(92) 726 . . . 735(92) M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00077 1933 . . . 1941(95) GATA-3 GATA-binding factor 3 M00045 1877 . . . 1888(95) E4BP4 E4BP4 M00054 489 . . . 480(95) NF-kappaB NF-kappaB M00141 476 . . . 484(94) Lyf-1 LyF-1 M00052 489 . . . 480(94) NF-kappaB NF-kappaB (p65) M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00053 489 . . . 480(94) c-Rel c-Rel M00278 1933 . . . 1941(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00076 1932 . . . 1941(93) GATA-2 GATA-binding factor 2 1007 . . . 1016(92) 1701 . . . 1692(91) M00285 1734 . . . 1746(92) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1135 . . . 1147(91) M00099 1813 . . . 1798(92) S8 S8 1134 . . . 1149(90) M00104 49 . . . 58(92) CDP cut-like homeodomain protein M00223 567 . . . 559(92) STATx signal transducers and activators of transcription M00075 1701 . . . 1692(92) GATA-1 GATA-binding factor 1 161 . . . 152(90) 1736 . . . 1745(90) M00348 316 . . . 325(92) GATA-2 GATA-binding factor 2 M00109 873 . . . 886(91) C/EBPbeta CCAAT/enhancer binding protein beta M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00203 318 . . . 328(91) GATA-X GATA binding site M00350 316 . . . 325(91) GATA-3 GATA-binding factor 3 M00289 404 . . . 416(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00113 833 . . . 822(90) CREB cAMP-responsive element binding protein M00249 1165 . . . 1153(90) CHOP- heterodimers of CHOP and C/EBPalpha C/EBPalpha M00208 490 . . . 479(90) NF-kappaB NF-kappaB binding site M00190 1263 . . . 1250(90) C/EBP CCAAT/enhancer binding factor M00349 316 . . . 325(90) GATA-2 GATA-binding factor 2 M00116 1263 . . . 1250(90) C/EBPalpha CCAAT/enhancer binding protein alpha M00183 1050 . . . 1059(90) c-Myb c-Myb M00240 263 . . . 257(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 1477 . . . 1471(90) M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00302 1407 . . . 1418(90) NF-AT Nuclear factor of activated T-cells M00184 293 . . . 302(90) MyoD myoblast determining factor M00147 188 . . . 179(90) HSF2 heat shock factor 2 M00087 1004 . . . 1015(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1 M00033 778 . . . 765(90) p300 p300 M00194 491 . . . 478(90) NF-kappaB NF-kappaB

TABLE 22 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.10. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00148 1038 . . . 1032(100) SRY sex-determining region Y gene product 965 . . . 959(96) 1550 . . . 1556(92) 725 . . . 731(90) 1382 . . . 1376(90) 310 . . . 316(90) 1715 . . . 1709(90) 1824 . . . 1818(90) 12 . . . 18(90) 413 . . . 407(90) 1630 . . . 1624(90) 319 . . . 325(90) M00241 1800 . . . 1807(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00100 1123 . . . 1117(100) CdxA CdxA M00240 1240 . . . 1234(100) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog 262 . . . 256(90) M00141 474 . . . 482(100) Lyf-1 LyF-1 M00101 1123 . . . 1117(99) CdxA CdxA 540 . . . 546(97) 1429 . . . 1435(94) 982 . . . 988(92) 88 . . . 82(92) 741 . . . 735(92) 442 . . . 448(92) M00075 1838 . . . 1847(97) GATA-1 GATA-binding factor 1 1889 . . . 1898(93) 1736 . . . 1745(90) M00253 766 . . . 773(96) cap cap signal for transcription initiation 181 . . . 188(96) 1794 . . . 1801(95) 1893 . . . 1886(95) 1210 . . . 1217(94) 816 . . . 823(94) 1506 . . . 1499(92) 357 . . . 364(92) 1697 . . . 1704(92) 1090 . . . 1097(91) 1346 . . . 1339(91) 1877 . . . 1870(91) 71 . . . 78(90) 580 . . . 587(90) 1815 . . . 1808(90) 340 . . . 347(90) 502 . . . 509(90) 1319 . . . 1326(90) M00096 1827 . . . 1819(96) Pbx-1 Pbx-1 M00285 1734 . . . 1746(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1133 . . . 1145(91) 35 . . . 23(91) 1089 . . . 1101(90) M00134 325 . . . 343(94) HNF-4 hepatic nuclear factor 4 M00199 1797 . . . 1789(94) AP-1 AP-1 binding site 1789 . . . 1797(91) M00174 1788 . . . 1798(94) AP-1 activator protein 1 M00042 740 . . . 749(94) Sox-5 Sox-5 1631 . . . 1622(92) 667 . . . 676(91) M00106 672 . . . 681(94) CDP cut-like homeodomain protein M00158 340 . . . 327(93) COUP-TF COUP/HNF-4 heterodimer M00076 761 . . . 752(93) GATA-2 GATA-binding factor 2 1323 . . . 1332(92) 1005 . . . 1014(92) M00099 1813 . . . 1798(92) S8 S8 1132 . . . 1147(90) M00104 48 . . . 57(92) CDP cut-like homeodomain protein M00223 565 . . . 557(92) STATx signal transducers and activators of transcription M00033 826 . . . 813(92) p300 p300 M00271 1955 . . . 1960(92) AML-1a runt-factor AML-1 M00254 1831 . . . 1820(91) CCAAT cellular and viral CCAAT box M00289 402 . . . 414(91) HFH-3 HNF-3/Fkh Homolog 3 (=Freac-6) M00217 160 . . . 153(90) USF USF binding site M00183 1048 . . . 1057(90) c-Myb c-Myb M00188 1788 . . . 1798(90) AP-1 activator protein 1 M00083 67 . . . 60(90) MZF1 MZF1 M00184 292 . . . 301(90) MyoD myoblast determining factor M00147 187 . . . 178(90) HSF2 heat shock factor 2 M00087 1002 . . . 1013(90) Ik-2 Ikaros 2 M00172 1788 . . . 1798(90) AP-1 activator protein 1 M00221 1860 . . . 1850(90) SREBP-1 sterol regulatory element-binding protein 1

TABLE 23 putative transcription factor binding motifs within the DUB regulatory or promoter, region of hDUB 8.11. The position is indicated by nucleotides. Transfac Position(Score) Name Description M00348 71 . . . 80(100) GATA-2 GATA-binding factor 2 M00350 71 . . . 80(100) GATA-3 GATA-binding factor 3 M00349 71 . . . 80(100) GATA-2 GATA-binding factor 2 M00148 990 . . . 984(100) SRY sex-determining region Y gene product 1664 . . . 1658(100) 813 . . . 807(96) 917 . . . 911(96) 1858 . . . 1864(92) 1850 . . . 1856(92) 1836 . . . 1842(92) 1399 . . . 1405(90) 1514 . . . 1508(90) 680 . . . 686(90) 2104 . . . 2098(90) 368 . . . 362(90) 721 . . . 715(90) 1002 . . . 996(90) 1910 . . . 1904(90) 274 . . . 280(90) M00100 595 . . . 589(100) CdxA CdxA 1408 . . . 1402(100) 1474 . . . 1480(96) M00101 595 . . . 589(99) CdxA CdxA 1408 . . . 1402(99) 803 . . . 797(98) 1537 . . . 1531(98) 1715 . . . 1721(92) 699 . . . 693(92) 934 . . . 940(92) 43 . . . 37(92) 495 . . . 501(92) M00141 1282 . . . 1274(98) Lyf-1 LyF-1 M00347 71 . . . 80(97) GATA-1 GATA-binding factor 1 M00272 1573 . . . 1582(96) p53 tumor suppressor p53 M00253 1137 . . . 1144(96) cap cap signal for transcription initiation 136 . . . 143(96) 2074 . . . 2081(95) 457 . . . 464(95) 2173 . . . 2166(95) 721 . . . 728(94) 1444 . . . 1437(94) 660 . . . 653(94) 1792 . . . 1785(92) 312 . . . 319(92) 1632 . . . 1625(91) 535 . . . 542(91) 2095 . . . 2088(91) 1358 . . . 1365(91) 768 . . . 775(90) 295 . . . 302(90) 2157 . . . 2150(90) M00096 2107 . . . 2099(96) Pbx-1 Pbx-1 M00285 2014 . . . 2026(95) TCF11 TCF11/KCR-F1/Nrf1 homodimers 1418 . . . 1430(91) M00130 1657 . . . 1668(95) HFH-2 HNF-3/Fkh Homolog 2 M00077 2213 . . . 2221(95) GATA-3 GATA-binding factor 3 M00054 442 . . . 433(95) NF-kappaB NF-kappaB M00052 442 . . . 433(94) NF-kappaB NF-kappaB (p65) M00203 73 . . . 83(94) GATA-X GATA binding site M00199 2077 . . . 2069(94) AP-1 AP-1 binding site 2069 . . . 2077(91) 1994 . . . 2002(90) M00174 2068 . . . 2078(94) AP-1 activator protein 1 1436 . . . 1446(90) M00075 895 . . . 886(94) GATA-1 GATA-binding factor 1 2169 . . . 2178(93) 1091 . . . 1082(93) 1981 . . . 1972(92) 2016 . . . 2025(90) M00053 442 . . . 433(94) c-Rel c-Rel M00241 2080 . . . 2087(94) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00076 716 . . . 707(94) GATA-2 GATA-binding factor 2 2212 . . . 2221(93) 1609 . . . 1618(92) 957 . . . 966(92) 895 . . . 886(91) 1981 . . . 1972(91) M00106 627 . . . 636(94) CDP cut-like homeodomain protein M00033 731 . . . 718(94) p300 p300 M00227 2149 . . . 2141(94) v-Myb v-Myb M00158 295 . . . 282(93) COUP-TF COUP/HNF-4 heterodimer M00162 2080 . . . 2093(93) Oct-1 octamer-binding factor 1 M00278 2213 . . . 2221(93) Lmo2 complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 M00134 280 . . . 298(93) HNF-4 hepatic nuclear factor 4 M00032 226 . . . 235(93) c-Ets-1(p54) c-Ets-1(p54) M00172 1436 . . . 1446(92) AP-1 activator protein 1 2068 . . . 2078(90) M00117 1089 . . . 1076(92) C/EBPbeta CCAAT/enhancer binding protein beta M00223 520 . . . 512(92) STATx signal transducers and activators of transcription M00042 1911 . . . 1902(92) Sox-5 Sox-5 622 . . . 631(91) M00073 13 . . . 23(92) deltaEF1 deltaEF1 M00188 1436 . . . 1446(91) AP-1 activator protein 1 2068 . . . 2078(90) M00254 2111 . . . 2100(91) CCAAT cellular and viral CCAAT box M00099 2093 . . . 2078(91) S8 S8 2076 . . . 2091(90) 1417 . . . 1432(90) M00289 1657 . . . 1669(91) HFH-3 HNF-3/Fkh Homolog 3 (= Freac-6) 357 . . . 369(91) M00147 752 . . . 743(91) HSF2 heat shock factor 2 142 . . . 133(90) M00208 443 . . . 432(90) NF-kappaB NF-kappaB binding site M00217 115 . . . 108(90) USF USF binding site M00183 1333 . . . 1342(90) c-Myb c-Myb M00173 1436 . . . 1446(90) AP-1 activator protein 1 M00240 217 . . . 211(90) Nkx-2.5 homeo domain factor Nkx-2.5/Csx, tinman homolog M00184 1965 . . . 1974(90) MyoD myoblast determining factor 247 . . . 256(90) M00087 954 . . . 965(90) Ik-2 Ikaros 2 M00128 70 . . . 82(90) GATA-1 GATA-binding factor 1 M00145 1347 . . . 1362(90) Brn-2 POU factor Brn-2 M00194 444 . . . 431(90) NF-kappaB NF-kappaB

REFERENCES

-   1. Baek, K. H., Mondoux, M. A., Jaster, R., Fire-Levin, E., and     D'Andrea, A. D. (2001). DUB-2A, a new member of the DUB subfamily of     hematopoietic deubiquitinating enzymes, Blood 98, 636-42. -   2. Jaster, R., Baek, K. H., and D'Andrea, A. D. (1999). Analysis of     cis-acting sequences and trans-acting factors regulating the     interleukin-3 response element of the DUB-1 gene, Biochim Biophys     Acta 1446, 308-16. -   3. Jaster, R., Zhu, Y., Pless, M., Bhattacharya, S., Mathey-Prevot,     B., and D'Andrea, A. D. (1997). JAK2 is required for induction of     the murine DUB-1 gene, Mol Cell Biol 17, 3364-72. -   4. Migone, T. S., Humbert, M., Rascle, A., Sanden, D., D'Andrea, A.,     Johnston, J. A., Baek, K. H., Mondoux, M. A., Jaster, R.,     Fire-Levin, E., et al. (2001). The deubiquitinating enzyme DUB-2     prolongs cytokine-induced signal transducers and activators of     transcription activation and suppresses apoptosis following cytokine     withdrawal, Blood 98, 1935-41. -   5. Zhu, Y., Carroll, M., Papa, F. R., Hochstrasser, M., and     D'Andrea, A. D. (1996a). DUB-1, a deubiquitinating enzyme with     growth-suppressing activity, Proc Natl Acad Sci USA 93, 3275-9. -   6. Zhu, Y., Lambert, K., Corless, C., Copeland, N. G., Gilbert, D.     J., Jenkins, N. A., and D'Andrea, A. D. (1997). DUB-2 is a member of     a novel family of cytokine-inducible deubiquitinating enzymes, J     Biol Chem 272, 51-7.

7. Zhu, Y., Pless, M., Inhom, R., Mathey-Prevot, B., and D'Andrea, A. D. (1996b). The murine DUB-1 gene is specifically induced by the betac subunit of interleukin-3 receptor, Mol Cell Biol 16, 4808-17. Nucleotide sequence for hDUB4.1a atgaccctgcaacagagcatgcccttctgcattgagcatgcaatcatgaa tcacaggcggaggaactgcgagagtgcctacgttagcccaaggcctgacc cgacgatcccagggaccctcgacctaactggccccgcctcccgggcccca aacccggactcggcccccccgaagctccggatcctggggcccgcccctgg ccccgcgtcggaagaccatgggctcgctcctgggccttcctcaaaccctc cgcagtccaggcccggcttcctccaggtctccaggcaacgctgcggctcc gcccacgtcatggcgcccgaggagaacgcggggacagaactctggctgca gggtttcgagcgccgcttcctggcggcgcgctcactgcgctccttcccct ggcagagcttagaggcaaagttaagagactcatcagattctgagctgctg cgggatattttgcagaagactgtgaagcatcccgtgtgtgtgaagcaccc gccatcagtcaagtatgcccggtgctttctctcagaactcatcaaaaagg gtgcatctgtggtcaccagcagcacgagggctgtccacacggagcctttg gacgagctgtacgaggtgctggcggagactctgatggccaaggagtccac ccagggccaccggagctatttgctgccctcgggaggctcgttcacacttt ccgagatcacagccatcatctcccatggtactacaggcctggtcacatgg gacgccaccctctaccttgcagaatgggccatcgagaacccagcagcctt cactaacaggggtgtcctagagcttggcagtggcgctggcctcacaggcc tggccatctgcaagatgtgtcgcccccaggcatacatcttcagcgactgt cacagccgggtcctcgagcagctccgagggaatgtccttctcaatggcct ctcattagaggcagacatcactgccaacttagacgccccaggagaccaca ggagaaaaacaaccacttctgggacgaggacagggcccttgagaaaaggt ggtgtttggctgggccaccgaaaacccctcacccctgccagcacactcag tcccctctctggtggaacagagctctgcctgtggccctgggtcccagccc tgaaacccacaggtccagcggtggccagggacacaggcccacccctgcaa gccagcagaccaaacggcagacacctgaaacaagaagttcacgacgtgct gtattgcccagaagccatcgtgtcactggtcggggtcctgcggaggctgg ctgcctgccgggagcacaagcaggctcctgaggtctacctggcctttacc gtccgcaacccagagacgtgccagctgttcaccaccgagctagagatagc gtctttctgcaacctgcggtcccagcagaaaaaccttgtgatccttgttc cagtcgacatggaggacgactcactctacttgggaggtgagtggcagttc aaccacttttcaaaactcacatcttctcggccagatgcagcttttgctga aatccagcgtacttctctccctgagaagtcaccactctcatgtgagaccc gtgtcgacctctgtgatgatttggctcctgtggcaagacagcttgctccc agggagaagcctcctctgagtagcaggagacctgctgcggtgggggctgg gctccagaatatgggaaatacctgctacgtgaacgcttccctgcagtgcc tgacatacaaaccgccacttgccaactacatgctgttccgggagcactct caaacgtgtcatcgtcacaagggctgcatgctctgtactatgcaagctca catcacaagggccctccacattcctggccatgtcatccagccctcacagg cattggctgctggcttccatagaggcaagcaggaagatgcccatgaattt ctcatgttcactgtggatgccatgagaaaggcatgccttcccgggcacaa gcaggtagatcgtcactctaaggacaccaccctcatccaccaaatatttg gaggctactggagatctcaaatcaagtgtctccactgccacggcatttca gacacttttgacccttacctggacatcgccctggatatccaggcagctca gagtgtccagcaagctttggaacagttggtgaagcccgaagaactcaatg gagagaatgcctatcattgtggtgtttgtctccagagggcgccggcctcc aagacgttaactttacacaactctgccaaggtcctcatccttgtattgaa gagattccccgatgtcacaggcaacaaaattgccaagaatgtgcaatatc ctgagtgccttgacatgcagccatacatgtctcagcagaacacaggacct ctcgtctatgtcctctatgctgtgctggtccacgctgggtggagttgtca caacggacattactcctcttatgtcaaagctcaagaaggccagtggtata aaatggatgatgccgaggtcaccgcctctagcatcacttctgtcctgagt caacaggcctacgtcctcttttacatccagaagagtgaatgggaaagaca cagtgagagtgtgtcaagaggcagggaaccaagagcccttggcgtagaag acacagacaggcgagcaacgcaaggagagctcaagagagaccacccctgc ctccaggcccccgagttggacgagcacttggtggaaagagccactcagga aagcaccttagaccactggaaattccttcaagagcaaaacaaaacgaagc ctgagttcaacgtcagaagagtcgaaggtacggtgcctcccgacgtactt gtgattcatcaatcaaaatacaagtgtcggatgaagaaccatcatcctga acagcaaagctccctgctaaacctctcttcgacgaccccgacagatcagg agtccatgaacactggcacactcgcttccctacgagggaggaccaggaga tccaaagggaagaacaaacacagcaagagggctctgcttgtgtgccagtg a hDUB4.1a deduced polypeptide sequence MTLQQSMPFCIEHAIMNHRRRNCESAYVSPRPDPTIPGTLDLTGPASRAP NPDSAPPKLRILGPAPGPASEDHGLAPGPSSNPPQSRPGFLQVSRQRCGS AHVMAPEENAGTELWLQGFERRFLAARSLRSFPWQSLEAKLRDSSDSELL RDILQKTVKHPVCVKHPPSVKYARCFLSELIKKGASVVTSSTRAVHTEPL DELYEVLAETLMAKESTQGHRSYLLPSGGSFTLSEITAIISHGTTGLVTW DATLYLAEWAIENPAAFTNRGVLELGSGAGLTGLAICKMCRPQAYIFSDC HSRVLEQLRGNVLLNGLSLEADITANLDAPGDHRRKTTTSGTRTGPLRKG GVWLGHRKPLTPASTLSPLSGGTELCLWPWVPALKPTGPAVARDTGPPLQ ASRPNGRHLKQEVHDVLYCPEAIVSLVGVLRRLAACREHKQAPEVYLAFT VRNPETCQLFTTELEIASFCNLRSQQKNLVILVPVDMEDDSLYLGGEWQF NHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAP REKPPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYKPPLANYMLFREHS QTCHRHKGCMLCTMQAHITRALHIPGHVIQPSQALAAGFHRGKQEDAHEF LMFTVDAMRKACLPGHKQVDRHSKDTTLIHQIFGGYWRSQIKCLHCHGIS DTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPAS KTLTLHNSAKVLILVLKRFPDVTGNKIAKNVQYPECLDMQPYMSQQNTGP LVYVLYAVLVHAGWSCHNGHYSSYVKAQEGQWYKMDDAEVTASSITSVLS QQAYVLFYIQKSEWERHSESVSRGREPRALGVEDTDRRATQGELKRDHPC LQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRRVEGTVPPDVL VIHQSKYKCRMKNHHPEQQSSLLNLSSTTPTDQESMNTGTLASLRGRTRR SKGKNKHSKRALLVCQ Nucleotide sequence for hDUB4.1b atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggccagatgcagcttttgctgaaatccagc gtacttctctccctgagaagtcaccactctcatgtgagacccgtgtcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccagggagaa gcctcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgtgaacgcttccctgcagtgcctgacatac aaaccgccacttgccaactacatgctgttccgggagcactctcaaacgtg tcatcgtcacaagggctgcatgctctgtactatgcaagctcacatcacaa gggccctccacattcctggccatgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagatgcccatgaatttctcatgtt cactgtggatgccatgagaaaggcatgccttcccgggcacaagcaggtag atcgtcactctaaggacaccaccctcatccaccaaatatttggaggctac tggagatctcaaatcaagtgtctccactgccacggcatttcagacacttt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtcc agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattgtggtgtttgtctccagagggcgccggcctccaagacgtt aactttacacaactctgccaaggtcctcatccttgtattgaagagattcc ccgatgtcacaggcaacaaaattgccaagaatgtgcaatatcctgagtgc cttgacatgcagccatacatgtctcagcagaacacaggacctctcgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacaacggac attactcctcttatgtcaaagctcaagaaggccagtggtataaaatggat gatgccgaggtcaccgcctctagcatcacttctgtcctgagtcaacaggc ctacgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagcccttggcgtagaagacacagac aggcgagcaacgcaaggagagctcaagagagaccacccctgcctccaggc ccccgagttggacgagcacttggtggaaagagccactcaggaaagcacct tagaccactggaaattccttcaagagcaaaacaaaacgaagcctgagttc aacgtcagaagagtcgaaggtacggtgcctcccgacgtacttgtgattca tcaatcaaaatacaagtgtcggatgaagaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgacgaccccgacagatcaggagtccatg aacactggcacactcgcttccctacgagggaggaccaggagatccaaagg gaagaacaaacacagcaagagggctctgcttgtgtgccagtga hDUB4.1b deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVD LCDDLAPVARQLAPREKPPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTY KPPLANYMLFREHSQTCHRHKGCMLCTMQAHITRALHIPGHVIQPSQALA AGFHRGKQEDAHEFLMFTVDAMRKACLPGHKQVDRHSKDTTLIHQIFGGY WRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGEN AYHCGVCLQRAPASKTLTLHNSAKVLILVLKRFPDVTGNKIAKNVQYPEC LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYSSYVKAQEGQWYKMD DAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGVEDTD RRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEF NVRRVEGTVPPDVLVIHQSKYKCRMKNHHPEQQSSLLNLSSTTPTDQESM NTGTLASLRGRTRRSKGKNKHSKRALLVCQ Nucleotide sequence for hDUB4.2a atgggaaatacctgctacgtgaacgcttccttgcagtgcctgacatacac accgccccttgccaactacatgctgtcccgggagcactctcaaacgtgtc atcgtcacaagggctgcatgctctgtactatgcaagctcacatcacacgg gccctccacaatcctggccacgtcatccagccctcacaggcattggctgc tggcttccatagaggcaagcaggaagatgcccatgaatttctcatgttca ctgtggatgccatgaaaaaggcatgccttcccaggcacaagcaggtagat catcactctaaggacaccaccctcatccaccaaatatttggaggctactg gagatctcaaatcaagtgtctccactgccacggcatttcagacacttttg acccttacctggacatcgccctggatatccaggcagctcagagtgtccag caagctttggaacagttggtgaagcccgaagaactcaatggagagaatgc ctatcattgtggtgtttgtctccagagggcgccggcctccaagacgttaa ctttacacacctctgccaaggtcctcatccttgtattgaagagattctcc gatgtcacaggcaacaagattgccaagaatgtgcaatatcctgagtgcct tgacatgcagccatacatgtctcagcagaacacaggacctcttgtctatg tcctctatgctgtgctggtccacgctgagtggagttgtcacaacggacat tacttctcttatgtcaaagctcaagaaggccagtggtataaaatggatga tgccgaggtcaccgccgctagcatcacttctgtcctgagtcaacaggcct acgtcctcttttacatccagaagagtgaatgggaaagacatagtgagagt gtgtcaagaggcagggaaccaagagcccttggcgcagaagacacagacag gcgagcaacgcaaggagagctcaagagagaccacccctgcctccaggccc ccgagttggacgagcacttggtggaaagagccactcaggaaagcacctta gaccactggaaattccttcaagagcaaaacaaaacgaagcctgagttcaa cgtcagaaaagtcaaaggtacagtgatcaaagttgaccagccccagagga aagctgcccagggcacaactcagggctccgtagaaccacagaatcttggg cgcaaccctgctcaagcacccaaatgtgcatacgaacagggtctccgtgt gacggaacatgtccactttcggcagcattacaattttggcaccaaatgtg ctaactgcaattccaccatacaatgcgtaactggaaatggaggcaacatc gccgatcctgaacgatcgatgcgagaatccaggatatgcacggcttattt tggccttttcccactgaaacaagggccagtattaaaaatgcagaaaaacc ttgtgatcctcgttccagtcgacatggaggacgactcactctacttggga ggtgagtggcagttcaaccacttttcaaaactcacatcttctcggcccga tgcagcttttgctgaaatccagcggacttctctccctgagaagtcaccac tctcatgtgagacccgtgtcgacctctgtgatgatttggctcctgtggca agacagcttgctcccagggagaagcttcctctgagtagcaggagacctgc tgcggtgggggctgggctccagaatatgggaaatacctgctacgtgaacg cttccttgcagtgcctgacatacacaacgccccttgccaactacatgctg tcccgggagcactctcaaacgtgtcatcgtcacaagggctgcatgctctg tactatgcaagctcacatcacacgggccctccacaatcctggccacgtca tccagccctcacaggcattggctgctggcttccatagaggcaagcaggaa gatgcccatgaatttctcatgttcactgtggatgccatgaaaaaggcatg ccttcccgggcacaagcaggtagatcatcactctaaggacaccaccctca tccaccaaatatttggaggctactggagatctcaaatcaagtgtctccac tgccacggcatttcagacacttttgacccttacctggacatcgccctaga tatccaggcagctcagagtgtccagcaagctttggaacagttggtgaagc ccgaagaactcaatggagagaatgcctatcattctggtgtttgtctccag agggcgccggcctccaagacgttaactttacacacctctgccaaggtcct catccttgtattgaagagattctccgatgtcacaggcaacaagattgcca agaatgtgcaatatcctgagtgccttgacatgcagccatacatgtctcag cagaacacaggacctcttgtctatgtcctctatgctgtgctggtccacgc tgggtggagttgtcacaacggacattacttctcttatgtcaaagctcaag aaggccagtggtataaaatggatgatgccgaggtcaccgccgctagcatc acttctgccctgagtcaacaggcctacgtcctcttttacatccagaagag tgaatgggaaagacacagtgagagtgtgtcaagaggcagggaaccaagag cccttggcacagaagacacagacaggcgagcaacgcaaggagagctcaag agagaccacccctgcctccaggcccccgagttggacgagcacttggtgga aagagccactcaggaaagcaccttagaccactggaaattccttcaagagc aaaacaaaacgaagcctgagttcaacgtcagaaaagtcgaaggtaccctg cctcccgacgtacttgtgattcatcaatcaaaatacaagtgtgggatgaa gaaccatcatcctgaacagcaaagctccctgctaaacctctcttcgtcga ccccgacacatcaggagtccatgaacactggcacactcgcttccctgcga gggagggccaggagatccaaagggaagaacaaacacagcaagagggctct gcttgtgtgccagtga hDUB4.2a deduced polypeptide sequence MGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITR ALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPRHKQVD HHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQ QALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS DVTGNKIAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAEWSCHNGH YFSYVKAQEGQWYKMDDAEVTAASITSVLSQQAYVLFYIQKSEWERHSES VSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTL DHWKFLQEQNKTKPEFNVRKVKGTVIKVDQPQRKAAQGTTQGSVEPQNLG RNPAQAPKCAYEQGLRVTEHVHFRQHYNFGTKCANCNSTIQCVTGNGGNI ADPERSMRESRICTAYFGLFPLKQGPVLKMQKNLVILVPVDMEDDSLYLG GEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVA RQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTTPLANYML SREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQE DAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLH CHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHSGVCLQ RAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQ QNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTAASI TSALSQQAYVLFYIQKSEWERHSESVSRGREPRALGTEDTDRRATQGELK RDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTL PPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLR GRARRSKGKNKHSKRALLVCQ Nucleotide sequence for hDUB4.2b atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggcccgatgcagcttttgctgaaatccagc ggacttctctccctgagaagtcaccactctcatgtgagacccgtgtcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccagggagaa gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgtgaacgcttccttgcagtgcctgacatac acaacgccccttgccaactacatgctgtcccgggagcactctcaaacgtg tcatcgtcacaagggctgcatgctctgtactatgcaagctcacatcacac gggccctccacaatcctggccacgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagatgcccatgaatttctcatgtt cactgtggatgccatgaaaaaggcatgccttcccgggcacaagcaggtag atcatcactctaaggacaccaccctcatccaccaaatatttggaggctac tggagatctcaaatcaagtgtctccactgccacggcatttcagacacttt tgacccttacctggacatcgccctagatatccaggcagctcagagtgtcc agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattctggtgtttgtctccagagggcgccggcctccaagacgtt aactttacacacctctgccaaggtcctcatccttgtattgaagagattct ccgatgtcacaggcaacaagattgccaagaatgtgcaatatcctgagtgc cttgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacaacggac attacttctcttatgtcaaagctcaagaaggccagtggtataaaatggat gatgccgaggtcaccgccgctagcatcacttctgccctgagtcaacaggc ctacgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagcccttggcacagaagacacagac aggcgagcaacgcaaggagagctcaagagagaccacccctgcctccaggc ccccgagttggacgagcacttggtggaaagagccactcaggaaagcacct tagaccactggaaattccttcaagagcaaaacaaaacgaagcctgagttc aacgtcagaaaagtcgaaggtaccctgcctcccgacgtacttgtgattca tcaatcaaaatacaagtgtgggatgaagaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgtcgaccccgacacatcaggagtccatg aacactggcacactcgcttccctgcgagggagggccaggagatccaaagg gaagaacaaacacagcaagagggctctgcttgtgtgccagtga hDUB4.2b deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVD LCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTY TTPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALA AGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGY WRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGEN AYHSGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPEC LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD DAEVTAASITSALSQQAYVLFYIQKSEWERHSESVSRGREPRALGTEDTD RRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEF NVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESM NTGTLASLRGRARRSKGKNKHSKRALLVCQ Nucleotide sequence for hDUB4.3 atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggcccgatgcagcttttgctgaaatccagc ggacttctctccctgagaagtcaccactctcatgtgagacccgtgtcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccagggagaa gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgtgaacgcttccttgcagtgcctgacatac acaccgccccttgccaactacatgctgtcccgggagcactctcaaacgtg tcatcgtcacaagggctgcatgctctgtacgatgcaagctcacatcacac gggccctccacaatcctggccacgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagatgcccatgaatttctcatgtt cactgtggatgccatgaaaaaggcatgccttcccgggcacaagcaggtag atcatcactctaaggacaccaccctcatccaccaaatatttggaggctac tggagatctcaaatcaagtgtctccactgccacggcatttcagacacttt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtcc agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattgtggtgtttgtctccagagggcgccggcctccaagacgtt aactttacacacctctgccaaggtcctcatccttgtattgaagagattct ccgatgtgacaggcaacaagattgccaagaatgtgcaatatcctgagtgc cttgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacaacggac attacttctcttatgtcaaagctcaagaaggccaatggtataaaatggat gatgccgaggtcaccgccgctagcatcacttctgtcctgagtcaacaggc ctacgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagcccttggcgcagaagacacagac aggcgagcaacgcaaggagagctcaagagagaccacccctgcctccaggc ccccgagttggacgagcacttggtggaaagagccactcaggaaagcacct tagaccgctggaaattccttcaagagcaaaacaaaacgaagcctgagttc aacgtcagaaaagtcgaaggtaccctgcctcccgacgtacttgtgattca tcaatcaaaatacaagtgtgggatgaagaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgtcgaccccgacacatcaggagtccatg aacactggcacactcgcttccctgcgagggagggccaggagatccaaagg gaagaacaaacacagcaagagggctctgcttgtgtgccagtga hDUB4.3 deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVD LCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTY TPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALA AGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGY WRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGEN AYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPEC LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD DAEVTAASITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTD RRATQGELKRDHPCLQAPELDEHLVERATQESTLDRWKFLQEQNKTKPEF NVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESM NTGTLASLRGRARRSKGKNKHSKRALLVCQ Nucleotide sequence for hDUB4.5 atgcgccagagagctcgtcatttgaagactctctcggaagggatagcgtc tttctgcaacctgcggtcccagcagaaaaaccttgtgatccttgttccag tcgacatggaggaagactcactctacttgggaggtgagtggcagttcaac cacttttcaaaactcacatcttctcggcccgatgcagcttttgctgaaat ccagcggacttctctccctgagaagtcaccactctcatgtgagacccgtg tcgacctctgtgatgatttggctcctgtggcaagacagcttgctcccagg gagaagcttcctctgagtaacaggagacctgctgcggtgggggctgggct ccagaatatgggaaatacctgctacgtgaacgcttccttgcagtgcctga catacacaccgccccttgccaactacatgctgtcccgggagcactctcaa acgtgtcatcgtcacaagggctgcatgctctgtacgatgcaagctcacat cacacgggccctccacaatcctggccacgtcatccagccctcacaggcat tggctgctggcttccatagaggcaagcaggaagatgcccatgaatttctc atgttcactgtggatgccatgaaaaaggcatgccttcccgggcacaagca ggtggatcatcactctaaggacaccaccctcatccaccaaatatttggag gctactggagatctcaaatcaagtgtctccactgccacggcatttcagac acttttgacccttacctggacatcgccctggatatccaggcagctcagag tgtccagcaagctttggaacagttggtgaagcccgaagaactcaatggag agaatgcctatcattgtggtgtttgtctccagagggcgccggcctccaag acgttaactttacacacctctgccaaggtcctcatccttgtattgaagag attctccgatgtcacaggcaacaagattgacaagaatgtgcaatatcctg agtgccttgacatgaagctatacatgtctcagacgaactcaggacctctc gtctatgtcctctatgctgtgctggtccacgctgggtggagttgtcacaa cggacattacttctcttatgtcaaagctcaagaaggccagtggtataaaa tggatgatgccgaggtcaccgcctctagcatcacttctgtcctgagtcaa caggcctacgtcctcttttacatccagaagagtgaatgggaaagacacag tgagagtgtgtcaagaggcagggaaccaagagcccttggcgcagaagaca cagacaggcgagcaacgcaaggagagctcaagagagaccacccctgcctc caggcccccgagttggacgagcacttggtggaaagagccactcaggaaag caccttagaccactggaaattccttcaagagcaaaacaaaacgaagcctg agttcaacgtcagaaaagtcgaaggtaccctgcctcccgacgtacttgtg attcatcaatcaaaatacaagtgtgggatgaagaaccatcatcctgaaca gcaaagctccctgctaaacctctcttcgacgaccccgacacatcaggagt ccatgaacactggcacactcgcttccctgcgagggagggccaggagatcc aaagggaagaacaaacacagcaagagggctctgcttgtgtgccagtggtc tcagtggaagtaccgacccaca hDUB4.5 deduced polypeptide sequence MRQRARHLKTLSEGIASFCNLRSQQKNLVILVPVDMEEDSLYLGGEWQFN HFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPR EKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQ TCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFL MFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISD TFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASK TLTLHTSAKVLILVLKRFSDVTGNKIDKNVQYPECLDMKLYMSQTNSGPL VYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQ QAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCL QAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLV IHQSKYKCGMKNHHPEQQSSLLNLSSTTPTHQESMNTGTLASLRGRARRS KGKNKHSKRALLVCQWSQWKYRPT Nucleotide sequence for hDUB4.6 atggaggacg actcactcta cttgggaggt gagtggcagt tcaaccactt ttcaaaactc acatcttctc ggcccgatgc agcttttgct gaaatccagc ggacttctct ccctgagaag tcaccactct catgtgagac ccgtgtcgac ctctgtgatg atttggctcc tgtggcaaga cagcttgctc ccagggagaa gcttcctctg agtagcagga gacctgctgc ggtgggggct gggctccaga atatgggaaa tacctgctac gtgaacgctt ccttgcagtg cctgacatac acaccgcccc ttgccaacta catgctgtcc cgggagcact ctcaaacgtg tcatcgtcac aagggctgta tgctctgtac gatgcaagct cacatcacac gggccctcca caatcctggc cacgtcatcc agccctcaca ggcattggct gctggcttcc atagaggcaa gcaggaagat gcccatgaat ttctcatgtt cactgtggat gccatgaaaa aggcatgcct tcccgggcac aagcaggtgg atcatcactc taaggacacc accctcatcc accaaatatt tggaggctac tggagatctc aaatcaagtg tctccactgc cacggcattt cagacacttt tgacccttac ctggacatcg ccctggatat ccaggcagct cagagtgtcc agcaagcttt ggaacagttg gtgaagcccg aagaactcaa tggagagaat gcctatcatt gtggtgtttg tctccagagg gcgccggcct ccaagacgtt aactttacac acctctgcca aggtcctcat ccttgtattg aagagattct ccgatgtcac aggcaacaag attgccaaga atgtgcaata tcctgagtgc cttgacatgc agccatacat gtctcagacg aacacaggac ctctcgtcta tgtcctctat gctgtgctgg tccacgctgg gtggagttgt cacaacggac attacttctc ttatgtcaaa gctcaagaag gccagtggta taaaatggat gatgccgagg tcaccgcctc tagcatcact tctgtcctga gtcaacaggc ctacgtcctc ttttacatcc agaagagtga atgggaaaga cacagtgaga gtgtgtcaag aggcagggaa ccaagagccc ttggcgcaga agacacagac aggcgagcaa cgcaaggaga gctcaagaga gaccacccct gcctccaggc ccccgagttg gacgagcact tggtggaaag agccactcag gaaagcacct tagaccactg gaaattcctt caagagcaaa acaaaacgaa gcctgagttc aacgtcagaa aagtcgaagg taccctgcct cccgacgtac ttgtgattca tcaatcaaaa tacaagtgtg ggatgaagaa ccatcatcct gaacagcaaa gctccctgct aaacctctct tcgacgaccc cgacacatca ggagtccatg aacactggca cactcgcttc cctgcgaggg agggccagga gatccaaagg gaagaacaaa cacagcaaga gggctctgct tgtgtgccag tga hDUB4.6 deduced polypeptide sequence MEDDSLYLGG EWQFNHFSKL TSSRPDAAFA EIQRTSLPEK SPLSCETRVD LCDDLAPVAR QLAPREKLPL SSRRPAAVGA GLQNMGNTCY VNASLQCLTY TPPLANYMLS REHSQTCHRH KGCMLCTMQA HITRALHNPG HVIQPSQALA AGFHRGKQED AHEFLMFTVD AMKKACLPGH KQVDHHSKDT TLIHQIFGGY WRSQIKCLHC HGISDTFDPY LDIALDIQAA QSVQQALEQL VKPEELNGEN AYHCGVCLQR APASKTLTLH TSAKVLILVL KRFSDVTGNK IAKNVQYPEC LDMQPYMSQT NTGPLVYVLY AVLVHAGWSC HNGHYFSYVK AQEGQWYKMD DAEVTASSIT SVLSQQAYVL FYIQKSEWER HSESVSRGRE PRALGAEDTD RRATQGELKR DHPCLQAPEL DEHLVERATQ ESTLDHWKFL QEQNKTKPEF NVRKVEGTLP PDVLVIHQSK YKCGMKNHHP EQQSSLLNLS STTPTHQESM NTGTLASLRG RARRSKGKNK HSKRALLVCQ Nucleotide sequence for hDUB4.7 atggaggacg actcactcta cttgggtggt gagtggcagt tcaaccactt ttcaaaactc acatcttctc ggcccgatgc agcttttgct gaaatccagc ggacttctct ccctgagaag tcaccactct catgtgagac ccgtgtcgac ctctgtgatg atttggctcc tgtggcaaga cagcttgctc ccagggagaa gcttcctctg agtagcagga gacctgctgc ggtgggggct gggctccaga atatgggaaa tacctgctac gtgaacgctt ccttgcagtg cctgacatac acaccgcccc ttgccaacta catgctgtcc cgggagcact ctcaaacgtg tcatcgtcac aagggctgca tgctctgtac tatgcaagct cacatcacac gggccctcca caatcctggc cacgtcatcc agccctcaca ggcattggct gctggcttcc atagaggcaa gcaggaagat gcccatgaat ttctcatgtt cactgtggat gccatgaaaa aggcatgcct tcccgggcac aagcaggtag atcatcactc taaggacacc accctcatcc accaaatatt tggaggctac tggagatctc aaatcaactg tctccactgc cacggcattt cagacacttt tgacccttac ctggacatcg ccctggatat ccaggcagct cagagtgtcc agcaagcttt ggaacagttg gtgaagcccg aagaactcaa tggagagaat gcctatcatt gtggtgtttg tctccagagg gcgccggcct ccaagacgtt aactttacac acctctgcca aggtcctcat ccttgtattg aagagattct ccgatgtcac aggcaacaag attgccaaga atgtgcaata tcctgagtgc cttgacatgc agccatacat gtctcagcag aacacaggac ctcttgtcta tgtcctctat gctgtgctgg tccacgctgg gtggagttgt cacaacggac attacttctc ttatgtcaaa gctcaagaag gccagtggta taaaatggat gatgccgagg tcaccgccgc tagcatcact tctgtcctga gtcaacaggc ctacgtcctc ttttacatcc agaagagtga atgggaaaga cacagtgaga gtgtgtcaag aggcagggaa ccaagagccc ttggcgcaga agacacagac aggcgagcaa cgcaaggaga gctcaagaga gaccacccct gcctccaggc ccccgagttg gacgagcact tggtggaaag agccactcag gaaagcacct tagaccactg gaaattcctt caagagcaaa acaaaacgaa gcctgagttc aacgtcagaa aagtcgaagg taccctgcct cccgacgtac ttgtgattca tcaatcaaaa tacaagtgtg ggatgaagaa ccatcatcct gaacagcaaa gctccctgct aaacctctct tcgtcgaccc cgacacatca ggaggccatg aacactggca cactcgcttc cctgcgaggg aggaccagga gatccaaagg gaagaacaaa cacagcaaga gggctctgct tgtgtgccag tga hDUB4.7 deduced polypeptide sequence MEDDSLYLGG EWQFNHFSKL TSSRPDAAFA EIQRTSLPEK SPLSCETRVD LCDDLAPVAR QLAPREKLPL SSRRPAAVGA GLQNMGNTCY VNASLQCLTY TPPLANYMLS REHSQTCHRH KGCMLCTMQA HITRALHNPG HVIQPSQALA AGFHRGKQED AHEFLMFTVD ANKKACLPGH KQVDHHSKDT TLIHQIFGGY WRSQINCLHC HGISDTFDPY LDIALDIQAA QSVQQALEQL VKPEELNGEN AYHCGVCLQR APASKTLTLH TSAKVLILVL KRFSDVTGNK IAKNVQYPEC LDMQPYNSQQ NTGPLVYVLY AVLVHAGWSC HNGHYFSYVK AQEGQWYKMD DAEVTAASIT SVLSQQAYVL FYIQKSEWER HSESVSRGRE PRALGAEDTD RRATQGELKR DHPCLQAPEL DEHLVERATQ ESTLDHWKFL QEQNKTKPEF NVRKVEGTLP PDVLVIHQSK YKCGMKNHHP EQQSSLLNLS SSTPTHQEAM NTGTLASLRG RTRRSKGKNK HSKRALLVCQ Nucleotide sequence for hDUB4.8 atgcgccaga gagctcgtca tttgaagact ctctcggaag ggatagcgtc ttgctgcaaa ctgcggtccc agcagaaaaa ccttgtgatc cttgttccag tcgacatgga ggacgactca ctctacttgg gaggtgagtg gcagttcaac cacttttcaa aactcacatc ttctcggccc gatgcagctt ttgctgaaat ccagcggact tctctccctg agaagtcacc actctcatgt gagacccgtg tcgacctctg tgatgatttg gctcctgtgg caagacagct tgctcccagg gagaagcttc ctctgagtag caggagacct gctgcggtgg gggctgggct ccagaatatg ggaaatacct gctacgtgaa cgcttccttg cagtgcctga catacacacc gccccttgcc aactacatgc tgtcccggga gcactctcaa acgtgtcatc gtcacaaggg ctgcatgctc tgtacgatgc aagctcacat cacacgggcc ctccacaatc ctggccacgt catccagccc tcacaggcat tggctgctgg cttccataga ggcaagcagg aagatgccca tgaatttctc atgttcactg tggatgccat gaaaaaggca tgccttcccg ggcacaagca ggtagatcat cactctaagg acaccaccct catccaccaa atatttggag gctactggag atctcaaatc aagtgtctcc actgccacgg catttcagac acttttgacc cttacctgga catcgccctg gatatccagg cagctcagag tgtccagcaa gctttggaac agttggtgaa gcccgaagaa ctcaatggag agaatgccta tcattgtggt gtttgtctcc agagggcgcc ggcctccaag acgttaactt tacacacctc tgccaaggtc ctcatccttg tattgaagag attctccgat gtgacaggca acaagattgc caagaatgtg caatatcctg agtgccttga catgcagcca tacatgtctc agcagaacac aggacctctt gtctatgtcc tctatgctgt gctggtccac gctgggtgga gttgtcacaa cggacattac ttctcttatg tcaaagctca agaaggccaa tggtataaaa tggatgatgc cgaggtcacc gccgctagca tcacttctgt cctgagtcaa caggcctacg tcctctttta catccagaag agtgaatggg aaagacacag tgagagtgtg tcaagaggca gggaaccaag agcccttggc gcagaagaca cagacaggcg agcaacgcaa ggagagctca agagagacca cccctgcctc caggcccccg agttggacga gcacttggtg gaaagagcca ctcaggaaag caccttagac cactggaaat tccttcaaga gcaaaacaaa acgaagcctg agttcaacgt cagaaaagtc gaaggtaccc tgcctcccga cgtacttgtg attcatcaat caaaatacaa gtgtgggatg aagaaccatc atcctgaaca gcaaagctcc ctgctaaacc tctcttcgtc gaccccgaca catcaggagt ccatgaacac tggcacactc gcttccctgc gagggagggc caggagatcc aaagggaaga acaaacacag caagagggct ctgcttgtgt gccagtga hDUB4.8 deduced polypeptide sequence MRQRARHLKT LSEGIASCCK LRSQQKNLVI LVPVDMEDDS LYLGGEWQFN HFSKLTSSRP DAAFAEIQRT SLPEKSPLSC ETRVDLCDDL APVARQLAPR EKLPLSSRRP AAVGAGLQNM GNTCYVNASL QCLTYTPPLA NYMLSREHSQ TCHRHKGCML CTMQAHITRA LHNPGHVIQP SQALAAGFHR GKQEDAHEFL MFTVDANKKA CLPGHKQVDH HSKDTTLIHQ IFGGYWRSQI KCLHCHGISD TFDPYLDIAL DIQAAQSVQQ ALEQLVKPEE LNGENAYHCG VCLQRAPASK TLTLHTSAKV LILVLKRFSD VTGNKIAKNV QYPSCLDMQP YNSQQNTGPL VYVLYAVLVH AGWSCHNGHY FSYVKAQEGQ WYKMDDAEVT AASITSVLSQ QAYVLFYIQK SEWERHSESV SRGREPRALG AEDTDRRATQ GELKRDHPCL QAPELDEHLV ERATQESTLD HWKFLQEQNK TKPEFNVRKV EGTLPPDVLV IHQSKYKCGM KNHHPEQQSS LLNLSSSTPT HQESMNTGTL ASLRGRARRS KGKNKHSKRA LLVCQ Nucleotide sequence for hDUB4.10 atgtgcatac gaacagggtc tccgtgtgac gtgtgtgaaa actacagtgt gatgagcatg actggcagac agcttatcga ttgggctccc ctcaaaatcg gttatgagca ttcaagcaca ccgatgccca gggaacatgt ccactttcgg cagcattaca attttggcac caaatgtgct aactgcaatt ccaccataca atgcgtaact ggaaatggag gcaacatcgc cgatcctgaa cgatcgatgc gagaatccag gatatgcacg gcttattttg gccttttccc actgaaacaa gggccagtat taaaaatggt aatttcactc ggacagagaa tcaataggct caacgtggaa aggttatcgc tggaagggaa gaaaatacgc tgtgctaaat actatacttc attgactatt ctcaggtcag aaagcgcact ttcgacttct tgtccttccg tcgctgagag gatgatggca gctgccaaaa ggatagcgtc tttctgcaac ctgcggtccc agcagaaaaa ccttgtgatc ctcgttccag tcgacatgga ggacgactca ctctacttgg gaggtgagtg gcagttcaac cacttttcaa aactcacatc ttctcggccc gatgcagctt ttgctgaaat ccagcggact tctctccctg agaagtcacc actctcatgt gagacccgtg tcgacctctg tgatgatttg gctcctgtgg caagacagct tgctcccagg gagaagcttc ctctgagtag caggagacct gctgcggtgg gggctgggct ccagaatatg ggaaatacct gctacgtgaa cgcttccttg cagtgcctga catacacaac gccccttgcc aactacatgc tgtcccggga gcactctcaa acgtgtcatc gtcacaaggg ctgcatgctc tgtactatgc aagctcacat cacacgggcc ctccacaatc ctggccacgt catccagccc tcacaggcat tggctgctgg cttccataga ggcaagcagg aagatgccca tgaatttctc atgttcactg tggatgccat gaaaaaggca tgccttcccg ggcacaagca ggtagatcat cactctaagg acaccaccct catccaccaa atatttggag gctactggag atctcaaatc aagtgtctcc actgccacgg catttcagac acttttgacc cttacctgga catcgcccta gatatccagg cagctcagag tgtccagcaa gctttggaac agttggtgaa gcccgaagaa ctcaatggag agaatgccta tcattctggt gtttgtctcc agagggcgcc ggcctccaag acgttaactt tacacacctc tgccaaggtc ctcatccttg tattgaagag attctccgat gtcacaggca acaagattgc caagaatgtg caatatcctg agtgccttga catgcagcca tacatgtctc agcagaacac aggacctctt gtctatgtcc tctatgctgt gctggtccac gctgggtgga gttgtcacaa cggacattac ttctcttatg tcaaagctca agaaggccag tggtataaaa tggatgatgc cgaggtcacc gccgctagca tcacttctgc cctgagtcaa caggcctacg tcctctttta catccagaag agtgaatggg aaagacacag tgagagtgtg tcaagaggca gggaaccaag agcccttggc acagaagaca cagacaggcg agcaacgcaa ggagagctca agagagacca cccctgcctc caggcccccg agttggacga gcacttggtg gaaagagcca ctcaggaaag caccttagac cactggaaat tccttcaaga gcaaaacaaa acgaagcctg agttcaacgt cagaaaagtc gaaggtaccc tgcctcccga cgtacttgtg attcatcaat caaaatacaa gtgtgggatg aagaaccatc atcctgaaca gcaaagctcc ctgctaaacc tctcttcgtc gaccccgaca catcaggagt ccatgaacac tggcacactc gcttccctgc gagggagggc caggagatcc aaagggaaga acaaacacag caagagggct ctgcttgtgt gccagtga hDUB4.10 deduced polypeptide sequence MCIRTGSPCD VCENYSVMSM TGRQLIDWAP LKIGYEHSST PNPRSHVHFR QHYNFGTKCA NCNSTIQCVT GNGGNIADPE RSMRESRICT AYFGLFPLKQ GPVLKMVISL GQRINRLNVE RLSLEGKKIR CAKYYTSLTI LRSESALSTS CPSVAERMMA AAKRIASFCN LRSQQKNLVI LVPVDMEDDS LYLGGEWQFN HFSKLTSSRP DAAFAEIQRT SLPEKSPLSC ETRVDLCDDL APVARQLAPR EKLPLSSRRP AAVGAGLQNM GNTCYVNASL QCLTYTTPLA NYMLSREHSQ TCHRHKGCML CTMQAHITRA LHNPGHVIQP SQALAAGFHR GKQEDAHEFL NFTVDANKKA CLPGHKQVDH HSKDTTLIHQ IFGGYWRSQI KCLHCHGISD TFDPYLDIAL DIQAAQSVQQ ALEQLVKPEE LNGENAYHSG VCLQRAPASK TLTLHTSAKV LILVLKRFSD VTGNKIAKNV QYPECLDMQP YMSQQNTGPL VYVLYAVLVH AGWSCHNGHY FSYVKAQEGQ WYKMDDAEVT AASITSALSQ QAYVLFYIQK SEWERHSESV SRGREPRALG TEDTDRRATQ GELKRDHPCL QAPELDEHLV ERATQESTLD HWKFLQEQNK TKPEFNVRKV EGTLPPDVLV IHQSKYKCGM KNHHPEQQSS LLNLSSSTPT HQESMNTGTL ASLRGRARRS KGKNKHSKRA LLVCQ Nucleotide sequence for hDUB4.11 atgtgcatac gaacagggtc tccgtgtgac gtgtgtgaaa actacagtgt gatgagcatg actggcagac agcttatcga ttgggctccc ctcaaaatcg gttatgagca ttcaagcaca ccgatgccca ggacacttta catccggcac aggaagcctt ctgatggagc acacctggcc catgaaaaga caagggaaag aaacggggcc aaagggaaga aaatacgctg tgctaaatac tatacttcat tgactattct caggtcagaa agcgcacttt cgtcttcttg tccttccgtc gcggagagga tgatggcagc tgccaaaatc gacatggagg acgactcact ctacttggga ggtgagtggc agttcaacca cttttcaaaa ctcacatctt ctcggccaga tgcagctttt gctgaaatcc agcggacttc tctccctgag aagtcaccac tctcatatga tttggctcct gtggcaagac agcttgctcc cagggagaag cttcctctga gtagcaggag acctgctgcg gtgggggctg ggctccagaa tatgggaaat acctgctacg tgaacgcttc cttgcagtgc ctgacataca caccgcccct tgccaactac atgctgtccc gggagcactc tcaaacgtgt catcgtcaca agggctgcat gctctgtact atgcaagctc acatcacacg ggccctccac aatcctggcc acgtcatcca gccctcacag gcattggctg ctggcttcca tagaggcaag caggaagatg cccatgaatt tctcatgttc actgtggatg ccatgaaaaa ggcatgcctt cccaggcaca agcaggtaga tcatcactct aaggacacca ccctcatcca ccaaatattt ggaggctact ggagatctca aatcaagtgt ctccactgcc acggcatttc agacactttt gacccttacc tggacatcgc cctggatatc caggcagctc agagtgtcca gcaagctttg gaacagttgg tgaagcccga agaactcaat ggagagaatg cctatcattg tggtgtttgt ctccagaggg cgccggcctc caagacgtta actttacaca cctctgccaa ggtcctcatc cttgtattga agagattctc cgatgtcaca ggcaacaaga ttgccaagaa tgtgcaatat cctgagtgcc ttgacatgca gccatacatg tctcagcaga acacaggacc tcttgtctat gtcctctatg ctgtgctggt ccacgctgag tggagttgtc acaacggaca ttacttctct tatgtcaaag ctcaagaagg ccagtggtat aaaatggatg atgccgaggt caccgccgct agcatcactt ctgtcctgag tcaacaggcc tacgtcctct tttacatcca gaagagtgaa tgggaaagac atagtgagag tgtgtcaaga ggcagggaac caagagccct tggcgcagaa gacacagaca ggcgagcaac gcaaggagag ctcaagagag accacccctg cctccaggcc cccgagttgg acgagcactt ggtggaaaga gccactcagg aaagcacctt agaccactgg aaattccttc aagagcaaaa caaaacgaag cctgagttca acgtcagaaa agtcaaaggt accctgcctc ccgacgtact tgtgattcat caatcaaaat acaagtgtgg gatgaagaac catcatcctg aacagcaaag ctccctgcta aacctctctt cgtcgacccc gacacatcag gagtccatga acactggcac actcgcttcc ctgcgaggga gggccaggag atccaaaggg aagaacaaac acagcaagag ggctctgctt gtgtgccagt ga hDUB4.11 deduced polypeptide sequence MCIRTGSPCD VCENYSVMSM TGRQLIDWAP LKIGYEHSST PMPRTLYIRH RKPSDGAHLA HEKTRERNGA KGKKIRCAKY YTSLTILRSE SALSSSCPSV AERMMAAAKI DMEDDSLYLG GEWQFNHFSK LTSSRPDAAF AEIQRTSLPE KSPLSYDLAP VARQLAPREK LPLSSRRPAA VGAGLQNMGN TCYVNASLQC LTYTPPLANY MLSREHSQTC HRHKGCNLCT MQAHITRALH NPGHVIQPSQ ALAAGFHRGK QEDAHEFLMF TVDAMKKACL PRHKQVDHHS KDTTLIHQIF GGYWRSQIKC LHCHGISDTF DPYLDIALDI QAAQSVQQAL EQLVKPEELN GENAYHCGVC LQRAPASKTL TLHTSAKVLI LVLKRFSDVT GNKIAKNVQY PECLDMQPYN SQQNTGPLVY VLYAVLVHAE WSCHNGHYFS YVKAQEGQWY KMDDAEVTAA SITSVLSQQA YVLFYIQKSE WERHSESVSR GREPRALGAE DTDRRATQGE LKRDHPCLQA PELDEHLVER ATQESTLDHW KFLQEQNKTK PEFNVRKVKG TLPPDVLVIH QSKYKCGMKN HHPEQQSSLL NLSSSTPTHQ ESMNTGTLAS LRGRARRSKG KNKHSKRALL VCQ Nucleotide sequence for hDUB8.1 atgggggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggccagatgcagcttttgctgaaatccagc ggacttctctccctgagaagtcaccactctcatctgagacccgtgtcgac ctctgtgatgatttggctcctgtggcaagacagctcgctcccagggagaa gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgagaacgcttccctgcagtgcctgacatac acactgccccttgccaactacatgctgtcccgggagcactctcaaacatg tcagcgtcccaagtgctgcatgctctgtactatgcaagctcacatcacat gggccctccacagtcctggccatgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagatgtccatgaatttctcatgtt cactgtggatgccatgaaaaaggcatgccttcccggccacaagcaggtag atcatcactgcaaggacaccaccctcatccaccaaatatttggaggctgc tggagatctcaaatcaagtgtctccactgccacgggatttcagacacttt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtca agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattgcggtctttgtctccagagggcgccggcctccaacacgtt aactttacacacttctgccaaggtcctcatccttgtcttgaagagattct ccgatgtcgcaggcaacaaacttgccaagaatgtgcaatatcctgagtgc cttgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacgacggac attacttctcctatgtcaaagctcaagaagtccagtggtataaaatggat gatgccgaggtcactgtctgtagcatcatttctgtcctgagtcaacaggc ctatgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagccctcggcgctgaagacacagac aggcgagcaaagcaaggagagctcaagagagaccacccctgcctccaggc acccgagttggacgagcacttggtggaaagagccactcaggaaagcacct tagaccactggaaattcctgcaagagcaaaacaaaacgaagcctgagttc aacgtcggaaaagtcgaaggtaccctgcctcccaacgcacttgtgattca tcaatcaaaatacaagtgtgggatgaaaaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgacgacccggacagatcaggagtccatg aacactggcacactcgcttctctgcaagggaggaccaggagagccaaagg gaagaacaaacacagcaagagggctctgcttgtgtgccagtga hDUB8.1 deduced polypeptide sequence MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVD LCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTY TLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALA AGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGC WRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGEN AYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPEC LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMD DAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTD RRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEF NVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESM NTGTLASLQGRTRRAKGKNKHSKRALLVCQ Nucleotide sequence for HDUB8.3 Atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggccagatgcagcctttgctgaaatccagc Ggacttctctccctgagaagtcacaactctcaactgagacccgcgtcgac ttctgcgatgatttggcgcctgtggcaagacagcttgctcccagggagaa Gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgtgaacgcttcccagcagtgtctgacatac Acaccgccccttgccaactacatgctgtcccgggagcactctcaaacatg tcatcgtcacaagtgctgcatgctctgtaccatggaagctcacatcacat Ggcccctccacattcctggccatgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagctgcccttgaatttctcatgtt Cactgtggatgccatgaaaaaggcatgccttcccgggcacaagcaggtag atcatcactccaaggacaccaccctcatccaccaaatatttggagggtac Tggagatctcaaatcaagtgtctccactgccacggcatttcagacacttt tggcccttacctggacatcgccctggatatccaggaagctcagagtgtca Agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattgtggcaacaaaattgccaagaatgtgcaatatcctgagtg Ccttgacatgcagccatacatgtctcagcagaacacaggacctcttgtct atgtcctctatgctgtgctggtccacgccgggtggagttgtcacaacgga Cattacttctcttatgtcaaagttcaagaaggccagtggtataaaatgga tgatgccgaggtcactgcctctggcatcacctctgtcctgagtcaacagg Cctatgtcctcttttacatccacaagagtgaatgggaaagacacagtgag agtgtgtcaagaggcagggaaccaagagccctcggcgctgaagacacaga Caggcgagcaacgcaaggagagctcaagagagactacccctgcctccagg tacccgagttggacgagcacttggtggaaagagccactcaggaaagcacc Ttagaccactggaaattcctccaagagcaaaacaaaacgaagcctgagtt caacgtcagaaaacttgaaggtaccctgcctcccaacgtacttgtgattc Atcaatcaaaatacaagtgtgggatgaaaaaccatcatcctgaacagcaa agctccctgctaaacctctcttcgacgaacccgacagatcaggagtccat Gaacactggcacactcgcttctctgcaagggaggaccaggagagccaaag ggaagaacaaacactgcaagagggctctgcttgtgtgccagtga HDUB8.3 deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSQLSTETRVD FCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASQQCLTY TPPLANYMLSREHSQTCHRHKCCMLCTMEAHITWPLHIPGHVIQPSQALA AGFHRGKQEAALEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGY WRSQIKCLHCHGISDTFGPYLDIALDIQEAQSVKQALEQLVKPEELNGEN AYHCGNKIAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNG HYFSYVKVQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIHKSEWERHSE SVSRGREPRALGAEDTDRRATQGELKRDYPCLQVPELDEHLVERATQEST LDHWKFLQEQNKTKPEFNVRKLEGTLPPNVLVIHQSKYKCGMKNHHPEQQ SSLLNLSSTNPTDQESMNTGTLASLQGRTRRAKGKNKHCKRALLVCQ Nucleotide sequence for HDUB8.5 Atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggccagatgcagcttttgctgaaatccagc Ggacttctctccctgagaagtcaccactctcatctgaggcccgtgtcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccaggaagaa Gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgagaacgcttccctgcagtgcctgacatac Acaccgccccttgccaactacatgctgtcccgggagcactctcaaacatg tcagcgtcccaagtgctgcatgctctgtactatgcaagctcacatcacat Gggccctccacagtcctggtcatgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagatgcccatgaatttctcatgtt Cactgtggatgccatgaaaaaggcatgccttcccggccacaagcaggtag atcatcactctaaggacaccaccctcatccaccaaatatttggaggctgc Tggagatctcaaatcaagtgtctccactgccacgggatttcagacacttt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtca Agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattgcggtctttgtcttcagagggcgccagtctccaagacgtt Aactttacacacttttgccaaggaacgcatacttgaaacgcagagaccat gggtggtcacacgccacaaactagccaagagtgtgcaatatgctgagagc Cttgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacgatggac Attacttctcttatgtcaaagctcaagaaggccagtggtataaaatggat gatgccaaggtcactgcctgtagcatcacttctgtcctgagtcaacaggc Ctatgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagccctcggcgctgaagacacagac Aggcgagcaacgcaaggagagctcaagagagaccacccctgcctccaggc acccgagttggacgagcgcttggtggaaagagccactcaggaaagcacct Tagaccactggagattcccccaagagcaaaacaaaacgaagcctgagttc aacgtcagaaaagtcgaaggtaccctgcctcccaacgtacttgtgattca Tcaatcgaaatacaagtgtgggatgaaaaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgacgacccggacagatcaggagtccgtg aacactggcaccctcgcttctctgcaagggaggaccaggagatccaaagg gaagaacaaacacagcaagagggctctgcttgtgtgccagtga HDUB8.5 deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSEARVD LCDDLAPVARQLAPRKKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTY TPPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALA AGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGC WRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGEN AYHCGLCLQRAPVSKTLTLHTFAKERILETQRPWVVTRHKLAKSVQYAES LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMD DAKVTACSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTD RRATQGELKRDHPCLQAPELDERLVERATQESTLDHWRFPQEQNKTKPEF NVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESV NTGTLASLQGRTRRSKGKNKHSKRALLVCQ Nucleotide sequence for HDUB8.6 Atggaagacgactcactctatttgggaggtgactggcagttcaatcactt ttcaaaactcacatcttctcggctagatgcagcttttgctgaaatccagc Ggacttctctctctgaaaagtcaccactctcatctgagacccgtttcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccagggagaa Gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga agataggaaataccttctatgtgaacgtttccctgcagtgcctgacatac Acactgccgctttccaactacatgctgtcccgggaggactctcaaacgtg tcatcttcacaagtgctgcatgttctgtactatgcaagctcacatcacat Gggccctctaccgtcctggccatgtcatccagccctcacaggtattggct gctggcttccatagaggtgagcaggaggatgcccatgaatttctcatgtt Tactgtggatgccatgaaaaaggcatgccttcccgggcacaagcagctag atcatcactccaaggacaccaccctcatccaccaaatatttggagcgtat Tggagatctcaaatcaagtatctccactgccacggcatttcagacacctt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtca Agcaagctttggaacagttggtgaagcccaaagaactcaatggagagaat gcctatcattgtggtctttgtctccagaaggcgcctgcctccaagacgtt Aactttacccacttctgccaaggtcctcattcttgtattgaagagattct ccgatgtcacaggcaacaaacttgccaagaatgtgcaatatcctaagtgc Cgtgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacaacggac Attacttctcttatgtcaaagctcaagaaggccagtggtataaaatggat gatgccgaggtcactgcctctggcatcacctctgtcctgagtcaacaggc Ctatgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagcccttggtgctgaagacacagac Aggccagcaacgcaaggagagctcaagagagaccacccttgcctccaggt acccgagttggacgagcacttggtggaaagagccactcaggaaagcacct Tagaccactggaaattcccccaaaagcaaaacaaaacgaagcctgagttc aacgtcagaaaagttgaaggtaccctgcctcccaacgtacttgtgattca Tcaatcaaaatacaagtgtggtatgaaaaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgacgaaaccgacagatcaggagtccatg Aacactggcacactcgcttctctgcaagggagcaccaggagatccaaagg gaataacaaacacagcaagagatctctgcttgtgtgccagtga HDUB8.6 deduced polypeptide sequence MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFD LCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTY TLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALYRPGHVIQPSQVLA AGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAY WRSQIKYLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGEN AYHCGLCLQKAPASKTLTLPTSAKVLIIKLKRFSDVTGNKLAKNVQYPKC RDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD DAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTD RPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQKQNKTKPEF NVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESM NTGTLASLQGSTRRSKGNNKHSKRSLLVCQ Nucleotide sequence for HDUB8.7 Atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggccagatgcagcttttgctgaaatccagc Ggacttctctccctgagaagtcaccactctcatctgaggcccgtgtcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccaggaagaa Gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgagaacgcttccctgcagtgcctgacatac Acaccgccccttgccaactacatgctgtcccgggagcactctcaaacatg tcagcgtcccaagtgctgcatgctctgtactatgcaagctcacatcacat Gggccctccacagtcctggtcatgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagatgcccatgaatttctcatgtt Cactgtggatgccatgaaaaaggcatgccttcccggccacaagcaggtag atcatcactctaaggacaccaccctcatccaccaaatatttggaggctgc Tggagatctcaaatcaagtgtctccactgccacgggatttcagacacttt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtca Agcaagctttggaacagttggtgaagcccgaagaactcaatggagagaat gcctatcattgcggtctttgtctccagagggcgccagcctccaagacgtt Aactttacacacttctgccaaggtcctcatccttgtcttgaagagattct ccgatgtcacaggcaacaaacttgccaagaatgtgcaatatcctgagtgc Cttgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacgatggac Attacttctcttatgtcaaagctcaagaaggccagtggtataaaatggat gatgccaaggtcactgcctgtagcatcacttctgtcctgagtcaacaggc Ctatgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagccctcggcgctgaagacacagac Aggcgagcaacgcaaggagagctcaagagagaccacccctgcctccaggc acccgagttggacgagcgcttggtggaaagagccactcaggaaagcacct Tagaccactggagattcccccaagagcaaaacaaaacgaagcctgagttc aacgtcagaaaagtcgaaggtaccctgcctcccaacgtacttgtgattca Tcaatcgaaatacaagtgtgggatgaaaaaccatcatcctgaacagcaaa gctccctgctaaacctctcttcgacgacccggacagatcaggagtccgtg aacactggcaccctcgcttctctgcaagggaggaccaggagatccaaagg gaagaacaaacacagcaagagggctctgcttgtgtgccagtga HDUB8.7 deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSEARVD LCDDLAPVARQLAPRKKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTY TPPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALA AGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGC WRSQIKCLHCHGISDTVDPYLDIALDIQAAQSVKQALEQLVKPEELNGEN AYHCGLCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKLAKNVQYPEC LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMD DAKVTACSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTD RRATQGELKRDHPCLQAPELDERLVERATQESTLDHWRFPQEQNKTKPEF NVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESV NTGTLASLQGRTRRSKGKNKHSKRALLVCQ Nucleotide sequence for HDUB8.8 Atggaagacgactcactctatttgggaggtgactggcagttcaatcactt ttcaaaactcacatcttctcggctagatgcagcttttgctgaaatccagc Ggacttctctctctgaaaagtcaccactctcatctgagacccgtttcgac ctctgtgatgatttggctcctgtggcaagacagcttgctcccagggagaa Gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga agataggaaataccttctatgtgaacgtttccctgcagtgcctgacatac Acactgccgctttccaactacatgctgtcccgggaggactctcaaacgtg tcatcttcacaagtgctgcatgttctgtactatgcaagctcacatcacat Gggccctctaccgtcctggccatgtcatccagccctcacaggtattggct gctggcttccatagaggtgagcaggaggatgcccatgaatttctcatgtt Tactgtggatgccatgaaaaaggcatgccttcccgggcacaagcagctag atcatcactccaaggacaccaccctcatccaccaaatatttggagcgtat Tggagatctcaaatcaagtatctccactgccacggcatttcagacacctt tgacccttacctggacatcgccctggatatccaggcagctcagagtgtca Agcaagctttggaacagttggtgaagcccaaagaactcaatggagagaat gcctatcattgtggtctttgtctccagaaggcgcctgcctccaagacgtt Aactttacccacttctgccaaggtcctcattcttgtattgaagagattct ccgatgtcacaggcaacaaacttgccaagaatgtgcaatatcctaagtgc Cgtgacatgcagccatacatgtctcagcagaacacaggacctcttgtcta tgtcctctatgctgtgctggtccacgctgggtggagttgtcacaacggac Attacttctcttatgtcaaagctcaagaaggccagtggtataaaatggat gatgccgaggtcactgcctctggcatcacctctgtcctgagtcaacaggc Ctatgtcctcttttacatccagaagagtgaatgggaaagacacagtgaga gtgtgtcaagaggcagggaaccaagagcccttggtgctgaagacacagac Aggccagcaacgcaaggagagctcaagagagaccacccttgcctccaggt acccgagttggacgagcacttggtggaaagagccactcaggaaagcacct Tagaccactggaaattcccccaaaagcaaaacaaaacgaagcctgagttc aacgtcagaaaagttgaaggtaccctgcctcccaacgtacttgtgattca Tcaatcaaaatacaagtgtggtatgaaaaaccatcatcctgaacagcaaa gctccgtgctaaacctctcttcgacgaaaccgacagatcaggagtccatg aacactggcacactcgcttctctgcaagggagcaccaggagatccaaagg gaataacaaacacagcaagagatctctgcttgtgtgccagtga HDUB8.8 deduced polypeptide sequence MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFD LCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTY TLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALYRPGHVIQPSQVLA AGFHRGEQEDAHEFLNFTVDAMKKACLPGHKQLDHHSKDTThIHQIFGAY WRSQIKYLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGEN AYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKC RDMQPYMSQQNTGPLVYTLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD DAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTD RPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQKQNKTKPEF NVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSVLNLSSTKPTDQESM NTGTLASLQGSTRRSKGNNKHSKRSLLVCQ Nucleotide sequence for HDUB8.11 Atggaggacgactcactctacttgggaggtgagtggcagttcaaccactt ttcaaaactcacatcttctcggccagatgcagcctttgctgaaatccagc Ggacttctctccctgagaagtcacaactctcaactgagacccgcgtcgac ttctgcgatgatttggccgctgtggcaagacagctcgctcccagggagaa Gcttcctctgagtagcaggagacctgctgcggtgggggctgggctccaga atatgggaaatacctgctacgtgaacgcttcccagcagtgtctgacatac Ataccgccccttgccaactacatgctgtcccgggagcactctcaaacatg tcatcgtcacaagtgctgcatgctctgtaccatggaagctcacatcacat Ggcccctccacattcctggccatgtcatccagccctcacaggcattggct gctggcttccatagaggcaagcaggaagctgcccttgaatttctcatgtt Cactgtggatgccatgaaaaaggcatgccttcccgggcacaagcagatcc tcatcctcgtatggaagagattctccgatgtcacaggcaacaaaattgcc Aagaatgtgcaatatcctgagtgccttgacatgcagccatacatgtctca gcagaacacaggacctcttgtctatgtcctctatgctgtgctggtccacg Ccgggtggagttgtcacaacggacattacttctcttatgtcaaagttcaa gaaggccagtggtataaaatggatgatgccgagaagagtgaatgggaaag Acacagtgagagtgtgtcaagaggcagggaaccaagagccctcggcgctg aagacacagacaggcgagcaacgcaaggagagctcaagagagactacccc Tgcctccaggtacccgagttggacgagcacttggtggaaagagccactca ggaaagcaccttagaccactggaaattcctccaagagcaaaacaaaacga Agcctgagttcaacgtcagaaaacttgaaggtaccctgcctcccaacgta cttgtgattcatcaatcaaaatacaagtgtgggatgaaaaaccatcatcc Tgaacagcaaagctccctgctaaacctctcttcgacgaacccgacagatc aggagtccatgaacactggcacactcgcttctctgcaagggaggaccagg agatccaaagggaagaacaaacactgcaagagggctctgcttgtgtgcca gtga HDUB8.11 deduced polypeptide sequence MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSQLSTETRVD FCDDLAAVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASQQCLTY IPPLANYMLSREHSQTCHRHKCCMLCTNEAHITWPLHIPGHVIQPSQALA AGFHRGKQEAALEFLMFTVDAMKKACLPGHKQILILVWKRFSDVTGNKIA KNVQYPECLDMQPYNSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKVQ EGQWYKMDDAEKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDYP CLQVPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKLEGTLPPNV LVIHQSKYKCGMKNHHPEQQSSLLNLSSTNPTDQESMNTGTLASLQGRTR RSKGKNKHCKRALLVCQ Nucleotide sequence for HDUB4.4 sequence atggaggagg actcactcta cttgggtggt gagtggcagt tcaaccactt ttcaaaactc acatcttctc ggctcgatgc agcttttgct gaaatccagc ggacttctct ccctgagaag tcaccactct catgtgagac ccgtgtcgac ctctgtgatg atttggttcc tgaggcaaga cagcttgctc ccagggagaa gcttcctctg agtagcagga gacctgctgc ggtgggggct gggctccaga atatgggaaa tacctgctac gtgaacgctt ccttgcagtg cctgacatac acaccgcccc ttgccaacta catgctgtcc cgggagcact ctcaaacgtg tcatcgtcac aagggctgca tgctctgtac tatgcaagct cacatcacac gggccctcca caatcctggc cacgtcatcc agccctcaca ggcattggct gctggcttcc atagaggcaa gcaggaagat gcccatgaat ttctcatgtt cactgtggat gccatgaaaa aggcatgcct tcccgggcac aagcaggtag atcatccctc taaggacacc accctcatcc accaaatatt tggaggctac tggagatctc aaatcaagtg tctccactgc cacggcattt cagacacttt tgacccttac ctggacatcg ccctggatat ccaggcagct cagagtgtcc agcaagcttt ggaacagttg gtgaagcccg aagaactcaa tggagagaat gcctatcatt gtggtgtttg tctccagagg gcgccggcct ccaagacgtt aactttacac acttctgcca aggtcctcat ccttgtattg aagagattct ccgatgtcac aggcaacaag attgccaaga atgtgcaata tcctgagtgc cttgacatgc agccatacat gtctcagcag aacacaggac ctcttgtcta tgtcctctat gctgtgctgg tccatgctgg gtggagttgt cacaacggac attacttctc ttatgtcaaa gctcaagaag gccagtggta taaaatggat gatgccgagg tcaccgcctc ttagcatcac atctgtcctg agtcaacagg cctacgtcct cttttacatc cagaagagtg aatgggaaag acacagtgag agtgtgtcaa gaggcaggga accaagagcc cttggcgcag aagacacaga caggcgagta acgcaaggag agctcaagag agaccacccc tgactccagg cccccgagtt ggacgagcac ttggtggaaa gagccactca ggaaagcacc ttagaccact ggaaattcct tcaagagcaa aacaaaacga agcctgagtt caacgtcaga aaagtcgaag gtaccctgcc tcccgacgta cttgtgattc atcaatcaaa atacaagtgt gggatgaaga accatcatcc tgaacagcaa agctccctgc taaacctctc ttcgacgacc ccgacacatc agcagtccat gaacaatggc acactcgctt ccctgcgagg gagggccagg agatccaaag ggaagaacaa acacagcaag agggctctgc ttgtgtgcca gtga hDUB4.4 Deduced polypeptide sequence MEEDSLYLGG EWQFNHFSKL TSSRLDAAFA EIQRTSLPEK SPLSCETRVD LCDDLVPEAR QLAPREKLPL SSRRPAAVGA GLQNMGNTCY VNASLQCLTY TPPLANYMLS REHSQTCHRH KGCMLCTMQA HITRALHNPG HVIQPSQALA AGFHRGKQED AHEFLMFTVD ANKKACLPGH KQVDHPSKDT TLIHQIFGGY WRSQIKCLHC HGISDTFDPY LDIALDIQAA QSVQQALEQL VKPEELNGEN AYHCGVCLQR APASKTLTLH TSAKVLILVL KRFSDVTGNK IAKNVQYPEC LDMQPYNSQQ NTGPLVYVLY AVLVHAGWSC HNGHYFSYVK AQEGQWYKMD DAEVTAS Nucleotide sequence for hDUB4.9 atggaggacg actcactcta cttgggaggt gagtggcagt tcaaccactt ttcaaaactc acatctcctc ggcccgatgc agcttttgct gaaatccagc ggacttctct ccctgagaag tcaccactct catgtgagac ccgtgtcgac ctctgtgatt atttggctcc tgtggcaaga cagcttgctc ccagggagaa gcttcctctg agtagcagga gacctgctgc ggtgggggct gggctccaga atatgggaaa tacctgctac gtgaacgctt ccttgcagtg cctgacatac acaccgcccc ttgccaacta catgctgtcc cgggagcact ctcaaacgtg tcatcgtcac aagggctgca tgctctgtac tatgcaagct cacatcacac gggccctcca caatcctggc cacgtcatcc agccctcaca ggcattggct gctggcttcc atagaggcaa gcaggaagat gcccatgaat ttctcatgtt cactgtggat gccatgaaaa aggcatgcct tcccgggcac aagcaggtgg atcatcactc taaggacacc accctcatcc accaaatatt tggaggctac tggagatctc aaatcaagtg tctccactgc cacggcattt cagacacttt tgacccttac ctggacatcg ccctggatat ccaggcagct cagagtgtcc agcaagcttt ggaacagttg gtgaagcccg aagaactcaa tggagagaat gcctatcatt gtggtgtttg tctccagagg gcgccggcct ccaagacgtt aactttacac acctctgcca aggtcctcat ccttgtattg aagagattct ccgatgtcac aggcaacaag attgccaaga atgtgcaata tcctgagtgc cttgacatgc agccatacat gtctcagcag aacacaggac ctcttgtcta tgtcctctat gctgtgctgg tccacgctgg gtggagttgt cacaacggac attacttctc ttatgtcaaa gctcaagaag gccagtggta taaaattgat gatgccgagg tcaccgcctc tagcatcact tctgtcctga ctcaacaggc ctacgtcctc ttttacatcc agaagagtga atgggaaaga cacagtgaga gtgtgtcaag aggcagggaa ccaagagccc ttggctctga agactaa hDUB4.9 deduced polypeptide sequence MEDDSLYLGG EWQFNHFSKL TSPRPDAAFA EIQRTSLPEK SPLSCETRVD LCDYLAPVAR QLAPREKLPL SSRRPAAVGA GLQNMGNTCY VNASLQCLTY TPPLANYMLS REHSQTCHRH KGCMLCTMQA HITRALHNPG HVIQPSQALA AGFHRGKQED AHEFLMFTVD AMKKACLPGH KQVDHHSKDT TLIHQIFGGY WRSQIKCLHC HGISDTFDPY LDIALDIQAA QSVQQALEQL VKPEELNGEN AYHCGVCLQR APASKTLTLH TSAKVLILVL KRFSDVTGNK IAKNVQYPEC LDMQPYNSQQ NTGPLVYVLY AVLVHAGWSC HNGHYFSYVK AQEGQWYKID DAEVTASSIT SVLTQQAYVL FYIQKSEWER HSESVSRGRE PRALGSED Nucleotide sequence for hDUB8.2 sequence atgcggccag agagcccgtc atttgaagac tcggaagaga tagcgtcttt ctgcaacctg cggtcccagc cgaaaaacct tgtgatcctt gttccgggcg acatggagga cgactcactc tacttgggag gtgagtggca gttcaaccac ttttcaaaac tcacatcttc tcggccagat gcagcttttg ctgaaatcca gcggacttct ctctctgaga agtcatcact ctcatctgag acccgcgtcg acctctgtga tgatttggct cctgtggcaa gacagctcgc tcccagggag aagcttcctc tgagtagcag gagacctgct gcggtggggg ctgggctcca gaatatggga aatacctgct acgtgaacgc ttccctgcag tgcctgacat acacaccgcc ccttgccaac tacatgctgt cccgggagca ctctcaaacg tgtcatcgtc acaagtgctg catgctctgt actatgcaag ctcacatcac atggcccctc cacagtcctg gccatgtcat ccagccctca caggtgttgg ctgctggctt ccatagaggc gagcaggaag atgcccatga atttctcatg ttcactgtgg atgccatgaa aaaggcattc cttcccgggc acaagcattt agataatcac tctaaggaca ccaccctcat ccaccaaata tttggagggt actggagatc tcacatcaac tgtttccact gccacgggat ttcagacacc tttgaccctt acctggacat cgccctggat atccaggcag ctcagagtgt caagcaagct ttgtaacagt tggtgaagcc cgaagaactc aatggataaa atgcctatca ttgtggtctt tgtctccaga aggcgcctgc ctccaggacg ttaactttac acacttctgc caaggtcctc atccttgtat tgaagagatt ctctgaggtc acaggcaaca aacttgccaa gaatgtgcaa tatcctgagt gccttgacat gcagccatac atgtctcagc agaacacagg acctcttgtc tatgtcctct atgctgtgct ggtccacgct gggtggagtt gtcacaacgg acattactta tcttatgtca aactcaagaa ggccattggt ataaaatgga tgatgccgag gtcactgcct ccggtatcac ttctgtcctg agtcaacagg cctatgtcct cttttacatc cagaagaatg aatttggaag acccagttac agtgtgtcca taggcaggga accaagagct ctttgcgtga aggcaagtga attgtgtgtg aaataaaatg tcatgaataa atcttgcagt ggagtattta tttgtctcac tttgtaatca gtgaatgagc tttaaccaat atcaatgcct agtgcctacc ccccagagat aagaacttcc actctcttat gtgtaaccat ggcctctgga ttgcttatga ctctgaagat aattctcctt tcccccaacg tttcagaatc acttcaggtg gtggtaacag ataacacatc agtccctttc tctctctttt ctcttcactc aggaaaactc tcactgagac aaaggaaaat cctatggttt actggggagg aagaattccc tcaggagtga aattggtggc tccttcctcc ctgtcaagtc tcttcctcag gattgcccct ttgtctcttc aggact hDUB8.2 dedeuced polypeptide sequence MRPESPSFED SEEIASFCNL RSQPKNLVIL VPGDMEDDSL YLGGEWQFNH FSKLTSSRPD AAFAEIQRTS LSEKSSLSSE TRVDLCDDLA PVARQLAPRE KLPLSSRRPA AVGAGLQNMG NTCYVNASLQ CLTYTPPLAN YMLSREHSQT CHRHKCCMLC TMQAHITWPL HSPGHVIQPS QVLAAGFHRG EQEDAHEFLM FTVDANKKAF LPGHKHLDNH SKDTTLIHQI FGGYWRSHIN CFHCHGISDT FDPYLDTALD IQAAQSVKQA L Nucleotide sequence for hDUB8.9 atggaggaag actcactcta cttgggaggt gagtggcagt tcaaccactt ttcaaaactc acatcttctc agccagatgc agcttttcct gaaatccagc ggacttctct ccctgagaag tcaccactct catcggagac ccgtgtcgac ctctgtgacg atttggctcc tgtgacaaga cagcttgctc ccagggagaa gcttcctccg agtagcagga gacctgctgc ggtgggagct ggtctccaga atatgggaaa tacctgccac ttgaatgctt ccctgcagtg cctgacatac acaccgcccc ttgccaacta catgctgtcc tgggagctct ctcaaatgtg tcatcgtccc aagtgctgca tgctctgtat tatggaagct cacagcacac gggcacctcc accgtcctgg ccatgtcatc cagccctcac aggcattggc tgctgacttc catagagaca agcaggaaga tgcccatgaa tttctcatat tcactgtgga tgccattaga aaggcatgcc ttcccgggca caagcagcta gatcatcact gcaaggacac catcctcatc caccaaatat ttggagggta ctagagatct caaatcaagt gtctctactt ccacggcatt tcagacacct tcgaccctta cctggatatc gccctggata tccaggcagc tcagagtgtc aagcaagctt tggaacagtt ggtgaagccc gaagaactca atggagagaa tgcctatcat tgtggtcttt gtctccagaa ggcgcctgcc gccaagacgt taactttacc cacttctgcc aaggtcctca tccttgtctt gaagagattc tccgatgtca caggcaacaa acttgccaag aatctgcaat atcctgagtg cgttgacatg cagccataca tgtctcagca gaacacagga cctcttttct atgtcctcta tgctgttctc gtcatcaccg ggtggagttg tcacaacgga cattacttct cttgtgtcaa actcaagaag gccagtggta taaaatggat gatgccgagg tcactgcctc tggtatcact tctccttaga gtcaacaggc ctatgtcctc ttttacatcc agaagaatga atttggaaga cccagttaca gggtgtccgc aggcagagaa ccaagagctc tttgtgctga agacaattga attgtggtga aataatatgt catgaataaa tcttgcagca gatttatttg tctcactttg taatcagtga atgagcttta acgaatatca atgcctagtg cctacccccc agagataaga acttccagtt tctcatgtgt aatcatggca tctggattgc tcatgattct gaagataatt ctcctgtccc ccaaagtttc agaatcactt caggtggtag aaacagataa cacatcagtc cctttctctc tcttttctct tca hDUB8.9 Deduced polypeptide sequence MEDDSLYLGG EWQFNHFSKL TSSRPDAAFA EIQRTSLSEK SSLSSETRVD LCDDLAPVAR QLAPREKLPL SSRRPAAVGA GLQNMGNTCY VNASLQCLTY TPPLANYNLS REHSQTCHRH KCCMLCTMQA HITWPLHSPG HVIQPSQVLA AGFHRGEQED AHEFLNFTVD AMKKAFLPGH KHLDNHSKDT TLIHQIFGGY WRSHINCFHC HGISDTFDPY LDIALDIQAA QSVKQALEQL VKPEELNG Nucleotide sequence for hDUB8.10 atggaggacg actcactcta cttgggaggt gagtggcagt tcaaccactt ttcaaaactc acatcttctc ggccagatgc agcttttgct gaaatccagc ggacttctct ctctgagaag tcatcactct catctgagac ccgcgtcgac ctctgtgatg atttggctcc tgtggcaaga cagctcgctc ccagggagaa gcttcctctg agtagcagga gacctgctgc ggtgggggct gggctccaga atatgggaaa tacctgctac gtgaacgctt ccctgcagtg cctgacatac acaccgcccc ttgccaacta catgctgtcc cgggagcact ctcaaacgtg tcatcgtcac aagtgctgca tgctctgtac tatgcaagct cacatcacat ggcccctcca cagtcctggc catgtcatcc agccttcaca ggtgttggct gctggcttcc atagaggcga gcaggaagat gcccatgaat ttctcatgtt cactgtggat gccatgaaaa aagcattcct tcccgggcac aagcatttag ataatcactc taaggacacc accctcatcc accaaatatt tggagggtac tggagatctc acatcaactg tttccactgc catgggattt cagacacctt tgacccttac ctggacatcg ccctggatat ccaggcagct cagagtgtca agcaagcttt ggaacagttg gtgaagcccg aagaactcaa tggataaaat gcctatcatt gtggtctttg tctccagaag gcgcctacct ccaggacgtt aactttacac acttctgcca aggtcctcat ccttgtattg aagagattct ctgatgtcac aggcaacaaa cttgccaaga atgtgcaata tcctgagtgc cttgacatgc agccatacat gtctcagcag aacacaggac ctcttgtcta tgtcctctat gctgtgctgg tccacgctgg gtggagttgt cacaacggac attacttatc ttatgtcaaa ctcaagaagg ccattggtat aaaatggatg atgccgaggt cactgcctcc ggtatcactt ctgtcctgag tcaacaggcc tatgtcctct tttacatcca gaagaatgaa tttggaagac ccagttacag tgtgtccata ggcagggaac cgagagctct ttgcgtgaag gcaagtgaat tgtgtgtgaa ataaaatgtc atgaataaat cttgcagtgg agtatttatt tgtctcactt tgtaatcagt gaatgagctt taaccaatat caatgcctag tgcctacccc ccagagataa gaacttccac tctcttatgt gtaaccatgg cctctggatt gcttatgact ctgaagataa ttctcctttc ccccaacgtt tcagaatcac ttcaggtggt ggtaacagat aacacatcag tccctttctc tctcttttct cttcactcag gaaaactctc actgagacaa aggaaaatcc tatggtttac tggggaggaa gaattccctc aggagtgaaa ttggtggctc cttcctccct gtcaagtctc ttcctcagga ttgccccttt gtctcttcag gactctgctc atcaggcccg agatgccccc tggttgtgca tacctggcct gtgaagaaat a hDUB8.10 Deduced polypeptide sequence MEEDSLYLGG EWQFNHFSKL TSSQPDAAFP EIQRTSLPEK SPLSSETRVD LCDDLAPVTR QLAPREKLPP SSRRPAAVGA GLQNMGNTCH LNASLQCLTY TPPLANYMLS WELSQMCHRP KCCMLCIMEA HSTRAPPPSW PCHPALTGILG C

TABLE 24 Deduced Amino acid alignment of hDUB4.10 (Seq ID NO.22) and hDUB4.11 (Seq ID NO.24). hDUB4.10 MCIRTGSPCDVCENYSVMSMTGRQLIDWAPLKIGYEHSSTPMPREHVHFRQHYNFGTKCA  60 hDUB4.11 MCIRTGSPCDVCENYSVMSMTGRQLIDWAPLKIGYEHSSTPMPRT-LYIRHRK-------  52 ********************************************  :::*:: hDUB4.10 NCNSTIQCVTGNGGNIADPERSMRESRICTAYFGLFPLKQGPVLKMVISLGQRINRLNVE 120 hDUB4.11 ---------PSDGAHLAHEK-------------------------------------TRE  66          ..:*.::*. :                                     . * hDUB4.10 RLSLEGKKIRCAKYYTSLTILRSESALSTSCPSVAERMMAAAKRIASFCNLRSQQKNLVI 180 hDUB4.11 RNGAKGKKIRCAKYYTSLTILRSESALSSSCPSVAERMMAAAK----------------- 109 * . :***********************:************** hDUB4.10 LVPVDMEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDL 240 hDUB4.11 ---IDMEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLS--------YDL 158 :********************************************* **         ** hDUB4.10 APVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQ 300 hDUB4.11 APVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQ 218 **********************************************.************* hDUB4.10 TCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKA 360 hDUB4.11 TCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKA 278 ************************************************************ hDUB4.10 CLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQ 420 hDUB4.11 CLPRHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQ 338 *** ******************************************************** hDUB4.10 ALEQLVKPEELNGENAYHSGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNV 480 hDUB4.11 ALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNV 398 ******************.***************************************** hDUB4.10 QYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVT 540 hDUB4.11 QYPECLDMQPYMSQQNTGPLVYVLYAVLVHAEWSCHNGHYFSYVKAQEGQWYKMDDAEVT 458 ******************************* **************************** hDUB4.10 AASITSALSQQAYVLFYIQKSEWERHSESVSRGREPRALGTEDTDRRATQGELKRDHPCL 600 hDUB4.11 AASITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCL 518 ******.*********************************:******************* hDUB4.10 QAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGM 660 hDUB4.11 QAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVKGTLPPDVLVIHQSKYKCGM 578 ****************************************:******************* hDUB4.10 KNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ      715 hDUB4.11 KNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVC-      632 ******************************************************

TABLE 25 Nucleotide sequence alignment of hDUB4.5 (Seq ID NO.13), hDUB4.8 (Seq ID NO.19) and hDUB8.2 (Seq ID NO.43). hDUB4.5 ATGCG-CCAGAGACCTCGTCATTTGAAGACTCTCTCGGAAGGGATAGCGTCTTTCTGCAA   59 hDUB4.8 ATGCG-CCAGAGAGCTCGTCATTTGAAGACTCTCTCGGAAGGGATAGCGTCTTGCTGCAA   59 hDUB8.2 ATGCGGCCAGAGAGCCCGTCATTTGAAGA----CTCGGAAGAGATAGCGTCTTTCTGCAA   56 ***** ********* *************    ******** *********** ****** hDUB4.5 CCTGCGGTCCCAGCAGAAAAACCTTGTGATCCTTGTTCCAGTCGACATGGAGGAAGACTC  119 hDUB4.8 ACTGCGGTCCCAGCAGAAAAACCTTGTGATCCTTGTTCCAGTCGACATGGAGGACGACTC  119 hDUB8.2 CCTGCGGTCCCAGCCGAAAAACCTTGTGATCCTTGTTCCGGGCGACATGGAGGACGACTC  116  ************* ************************ * ************ ***** hDUB4.5 ACTCTACTTGGGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTCGGCC  179 hDUB4.8 ACTCTACTTGGGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTCGGCC  179 hDUB8.2 ACTCTACTTGGGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTCGGCC  176 ************************************************************ hDUB4.5 CGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATG  239 hDUB4.8 CGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATG  239 hDUB8.2 AGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCTCTGAGAAGTCATCACTCTCATC  236  ************************************ *********** ********* hDUB4.5 TGAGACCCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAG  299 hDUB4.8 TGAGACCCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAG  299 hDUB8.2 TGAGACCCGCGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTCGCTCCCAG  296 ********* ***************************************** ******** hDUB4.5 GGAGAAGCTTCCTCTGAGTAACAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATAT  359 hDUB4.8 GGAGAAGCTTCCTCTGAGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATAT  359 hDUB8.2 GGAGAAGCTTCCTCTGAGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATAT  356 ******************** *************************************** hDUB4.5 GGGAAATACCTGCTACGTGAACGCTTCCTTGCAGTGCCTGACATACACACCGCCCCTTGC  419 hDUB4.8 GGGAAATACCTGCTACGTGAACGCTTCCTTGCAGTGCCTGACATACACACCGCCCCTTGC  419 hDUB8.2 GGGAAATACCTGCTACGTGAACGCTTCCCTGCAGTGCCTGACATACACACCGCCCCTTGC  416 **************************** ******************************* hDUB4.5 CAACTACATGCTGTCCCGGGAGCACTCTCAAACGTGTCATCGTCACAAGGGCTGCATGCT  479 hDUB4.8 CAACTACATGCTGTCCCGGGAGCACTCTCAAACGTGTCATCGTCACAAGGGCTGCATGCT  479 hDUB8.2 CAACTACATGCTGTCCCGGGAGCACTCTCAAACGTGTCATCGTCACAAGTGCTGCATGCT  476 ************************************************* ********** hDUB4.5 CTGTACGATGCAAGCTCACATCACACGGGCCCTCCACAATCCTGGCCACGTCATCCAGCC  539 hDUB4.8 CTGTACGATGCAAGCTCACATCACACGGGCCCTCCACAATCCTGGCCACGTCATCCAGCC  539 hDUB8.2 CTGTACTATGCAAGCTCACATCACATGGCCCCTCCACAGTCCTGGCCATGTCATCCAGCC  536 ****** ****************** ** ********* ********* *********** hDUB4.5 CTCACAGGCATTGGCTGCTGGCTTCCATAGAGGCAAGCAGGAAGATGCCCATGAATTTCT  599 hDUB4.8 CTCACAGGCATTGGCTGCTGGCTTCCATAGAGGCAAGCAGGAAGATGCCCATGAATTTCT  599 hDUB8.2 CTCACAGGTGTTGGCTGCTGGCTTCCATAGAGGCGAGCAGGAAGATGCCCATGAATTTCT  596 ******** ************************ ************************* hDUB4.5 CATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGGCACAAGCAGGTGGATCA  659 hDUB4.8 CATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGGCACAAGCAGGTAGATCA  659 hDUB8.2 CATGTTCACTGTGGATGCCATGAAAAAGGCATTCCTTCCCGGGCACAAGCATTTAGATAA  656 ******************************** ******************  * *** * hDUB4.5 TCACTCTAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTACTGGAGATCTCAAAT  719 hDUB4.8 TCACTCTAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTACTGGAGATCTCAAAT  719 hDUB8.2 TCACTCTAAGGACACCACCCTCATCCACCAAATATTTGGAGGGTACTGGAGATCTCACAT  716 ****************************************** ************** ** hDUB4.5 CAAGTGTCTCCACTGCCACGGCATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCT  779 hDUB4.8 CAAGTGTCTCCACTGCCACGGCATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCT  779 hDUB8.2 CAACTGTTTCCACTGCCACGGGATTTCAGACACCTTTGACCCTTACCTGGACATCGCCCT  776 *** *** ************* *********** ************************** hDUB4.5 GGATATCCAGGCAGCTCAGAGTGTCCAGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGA  839 hDUB4.8 GGATATCCAGGCAGCTCAGAGTGTCCAGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGA  839 hDUB8.2 GGATATCCAGGCAGCTCAGAGTGTCAAGCAAGCTTTGTAACAGTTGGTGAAGCCCGAAGA  836 ************************* *********** ********************** hDUB4.5 ACTCAATGGAGAGAATGCCTATCATTGTGGTGTTTGTCTCCAGAGGGCGCCGGCCTCCAA  899 hDUB4.8 ACTCAATGGAGAGAATGCCTATCATTGTGGTGTTTGTCTCCAGAGGGCGCCGGCCTCCAA  899 hDUB8.2 ACTCAATGGATAAAATGCCTATCATTGTGGTCTTTGTCTCCAGAAGGCGCCTGCCTCCAA  896 ********** * ****************** ************ ****** ******* hDUB4.5 GACGTTAACTTTACACACCTCTGCCAAGGTCCTCATCCTTGTATTGAAGAGATTCTCCGA  959 hDUB4.8 GACGTTAACTTTACACACCTCTGCCAAGGTCCTCATCCTTGTATTGAAGAGATTCTCCGA  959 hDUB8.2 GACGTTAACTTTACACACTTCTGCCAAGGTCCTCATCCTTGTATTGAAGAGATTCTCTGA  959 ****************** ************************************** ** hDUB4.5 TGTCACAGGCAACAAGATTGACAAGAATGTGCAATATCCTGAGTGCCTTGACATGAAGCT 1019 hDUB4.8 TGTGACAGGCAACAAGATTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGCAGCC 1019 hDUB8.2 GGTCACAGGCAACAAACTTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGCAGCC 1016  ** ***********  *** ********************************** *** hDUB4.5 ATACATGTCTCAGACGAACTCAGGACCTCTCGTCTATGTCCTCTATGCTGTGCTGGTCCA 1079 hDUB4.8 ATACATGTCTCAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCA 1079 hDUB8.2 ATACATGTCTCAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCA 1076 *************  **** ********** ***************************** hDUB4.5 CGCTGGGTGGAGTTGTCACAACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCA 1139 hDUB4.8 CGCTGGGTGGAGTTGTCACAACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCA 1139 hDUB8.2 CGCTGGGTGGAGTTGTCACAACGGACATTACTTATCTTATGTCAAA-CTCAAGAAGGCCA 1135 ********************************* ************ ************* hDUB4.5 GTGGTATAAAATGGATGATGCCGAGGTCACCGCCTCTAGCATCACTTCTGTCCTGAGTCA 1199 hDUB4.8 ATGGTATAAAATGGATGATGCCGAGGTCACCGCCGCTAGCATCACTTCTGTCCTGAGTCA 1199 hDUB8.2 TTGGTATAAAATGGATGATGCCGAGGTCACTGCCTCCGGTATCACTTCTGTCCTGAGTCA 1195  ***************************** *** * * ******************** hDUB4.5 ACAGGCCTACGTCCTCTTTTACATCCAGAAGAGTGAATGGGAAAGACACAGTGAGAGTGT 1259 hDUB4.8 ACAGGCCTACGTCCTCTTTTACATCCAGAAGAGTGAATGGGAAAGACACAGTGAGAGTGT 1259 hDUB8.2 ACAGGCCTATGTCCTCTTTTACATCCAGAAGAATGAATTTGGAAGACCCAGTTACAGTGT 1259 ********* ********************** *****  * ***** **** * ***** hDUB4.5 GTCAAGAGGCAGGGAAACCAAGAGCCCTTGGCGCAGAAGACACAGACAGGCGAGCAACGCA 1319 hDUB4.8 GTCAAGAGGCAGGGAAACCAAGAGCCCTTGGCGCAGAAGACACAGACAGGCGAGCAACGCA 1319 hDUB8.2 GTCCATAGGCAGGGAAACCAAGAGCTCTTTGCGTGAAGGCAAGTGAATTGTGTGTGAAATA 1315 *** * ******************* *** ***   * *  *  **   * * *  *   * hDUB4.5 AGGAGAGCTCAAGAGAGACCACCCCTGCCTCCAGGCCCCCGAGTTGGACGAGCACTTGGT 1379 hDUB4.8 AGGAGAGCTCAAGAGAGACCACCCCTGCCTCCAGGCCCCCGAGTTGGACGAGCACTTGGT 1379 hDUB8.2 AAATG---TCATGA---ATAAATCTTGCAGTGGAGTATTT-ATTTGTCTCACTTTGTAAT 1368 *   *   *** **   *  *  * ***      *      * ***    *     *  * hDUB4.5 GGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCTTCAAGAGCAAAACAA 1439 hDUB4.8 GGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCTTCAAGAGCAAAACAA 1439 hDUB8.2 CAGTGAATGAGCTTTAACCAATATCAATGCCTAGTGCCTACCCCCCAGAGATAAGAACTT 1428       *    **      *  * *   * * * **   *  **    ***  * *** hDUB4.5 AACGAAGCCTGAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTCCCGACGTACTTGT 1499 hDUB4.8 AACGAAGCCTGAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTCCCGACGTACTTGT 1499 hDUB8.2 CCACTCTCTTATGTGTAAC--CATGGCCTCTGGATTGCTTATGACTCTGAAGATAATTCT 1486        * *  **  ***  **        * *       ** ***   *  ** ** * hDUB4.5 GATTCATCAATCAAAATACAAGTGTGGGATGAAGAACCATCATCCTG-AACAGCAAAGCT 1558 hDUB4.8 GATTCATCAATCAAAATACAAGTGTGGGATGAAGAACCATCATCCTG-AACAGCAAAGCT 1558 hDUB8.2 CCTT--TCCCCCAACGTTTCAGAATCACTTCAGGTGGTGGTAACAGATAACACATCAGTC 1544   **  **   ***  *   **  *    * * *       * *    ****    ** hDUB4.5 CCCTGCTAAACCTCTCTTCGACGACCCCGACACATCAGGAGTCCATGAACACTGGCACAC 1618 hDUB4.8 CCCTGCTAAACCTCTCTTCGACGACCCCGACACATCAGGAGTCCATGAACACTGGCACAC 1618 hDUB8.2 CCTTTCTCTCTCTTTTCTCTTCACTCAGGAAAACTCTCACTGAGACAAAGGAAAATCCTA 1604 ** * **    ** *  **  *   *  ** *  **        *  **        * hDUB4.5 TCGCTTCCCTGCGAGGGAGGGC-----CAGGAGATCCAAAGGGAAGAACAAACACAGCAA 1673 hDUB4.8 TCGCTTCCCTGCGAGGGAGGGC-----CAGGAGATCCAAAGGGAAGAACAAACACAGCAA 1673 hDUB8.2 TGGTTTACTGGGGAGGAAGAATTCCCTCAGGAGTGAAATTGGTGGCTCCTTCCTCCCTGT 1664 * * ** *  * **** **        ******    *  **      *   * * hDUB4.5 GAGGGCTCTGCTTGTGTG----CCAGTGGTCTCAGTGGAAGTACCGACCCACA        1722 hDUB4.8 GAGGGCTCTGCTTGTGTG----CCAGTGA------------------------        1698 hDUB8.2 CAAGTCTCTTCCTCAGGATTGCCCCTTTGTCTCTTCAGGACT-----------        1706  * * **** * *  *      **  * In frame termination codons in hDUB8.2 are underlined

TABLE 26 Deduced amino acid alignment of hDUB4.5 (Seq ID NO.14), hDUB4.8 (Seq ID NO.20) and hDUB8.2 (Seq ID NO.44). hDUB4.5 MRQRARHLKTLSEGIASFCNLRSQQKNLVILVPVDMEEDSLYLGGEWQFNHFSKLTSSRP  60 hDUB4.8 MRQRARHLKTLSEGIASCCKLRSQQKNLVILVPVDMEDDSLYLGGEWQFNHFSKLTSSRP  60 hDUB8.2 MRPESPSFED-SEEIASFCNLRSQPKNLVILVPGDMEDDSLYLGGEWQFNHFSKLTSSRP  59 ** .:  ::  ** *** *:**** ******** ***:********************** hDUB4.5 DAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNM 120 hDUB4.8 DAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNM 120 hDUB8.2 DAAFAEIQRTSLSEKSSLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNM 119 ************.***.**.**************************.************* hDUB4.5 GNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQP 180 hDUB4.8 GNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQP 180 hDUB8.2 GNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKCCMLCTMQAHITWPLHSPGHVIQP 179 ************************************ *********** .**.******* hDUB4.5 SQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQI 240 hDUB4.8 SQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQI 240 hDUB8.2 SQVLAAGFHRGEQEDAHEFLMFTVDAMKKAFLPGHKHLDNHSKDTTLIHQIFGGYWRSHI 239 **.********:****************** *****::*:******************:* hDUB4.5 KCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASK 300 hDUB4.8 KCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASK 300 hDUB8.2 NCFHCHGISDTFDPYLDIALDIQAAQSVKQAL---------------------------- 271 :*:*************************:*** hDUB4.5 TLTLHTSAKVLILVLKRFSDVTGNKIDKNVQYPECLDMKLYMSQTNSGPLVYVLYAVLVH 360 hDUB4.8 TLTLHTSAKVLILVLKRFSDVTGNKIDKNVQYPECLDMKLYMSQTNSGPLVYVLYAVLVH 360 hDUB8.2 ------------------------------------------------------------ hDUB4.5 AGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESV 420 hDUB4.8 AGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESV 420 hDUB8.2 ------------------------------------------------------------ hDUB4.5 SRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNK 480 hDUB4.8 SRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNK 480 hDUB8.2 ------------------------------------------------------------ hDUB4.5 TKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTTPTHQESMNTGTL 540 hDUB4.8 TKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTTPTHQESMNTGTL 540 hDUB8.2 ------------------------------------------------------------ hDUB4.5 ASLRGRARRSKGKNKHSKRALLVCQWSQWKYRPT                           574 hDUB4.8 ASLRGRARRSKGKNKHSKRALLVCQ---------                           565 hDUB8.2 ---------------------------------- N-terminal potential mitochondrial targeting sequences are underlined.

TABLE 27 Upstream of initiation codon nucleotide sequence (putative promoter region) alignment of hDUB4.5 (Seq ID NO.13), hDUB4.8 (Seq ID NO.19) and hDUB8.2 (Seq ID NO.43). Numbering is initiated from initiation ATG. hDUB4.5 CACACGAACACAATCACACACACACACTCACACGGTTTCCTACGTAAAGATTTCTTCCCT −276 hDUB4.8 CACACGAACACAATCACACACACACACTCACACGGTTTCCTACGTAAAGATTTCTTCCCT −276 hDUB8.2 GGGAGAAAAACACACACACACACACACACACACGGTTTCATAGGTAAAGATTTCTTCCCT −276    *  ** ***  ************* *********** ** ***************** hDUB4.5 GCCATTGCTTTACCTAAAATAAGGCAACTGTGTGGCCACTGTCCCAACCCGGTTACACTC −216 hDUB4.8 GCCATTGCTTTACCTAAAATAAGGCAACTGTGTGGCCACTGTCCCAACCCGGTTACACTC −216 hDUB8.2 GACATTGTTTTACCTAAAATAAGGCAACTGTGTGGCCACTGTCCCAACCCGGTTACACTC −216 * ***** **************************************************** hDUB4.5 CTATTATATGTGCCTATCATCCTGAGGAGTAATTTGATTCAGGTGTTCTGGAAGTCATGC −156 hDUB4.8 CTATTATATGTGCCTATCATCCTGAGGAGTAATTTGATTCAGGTGTTCTGGAAGTCATGC −156 hDUB8.2 ATATTACATGTGTCTATCAGCCTGAGGAGTAGTTTGATTCAGGTGTTCTAGAAGTCATGA −156  ***** ***** ****** ************ ***************** ******** hDUB4.5 TGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTCCTTCC  −96 hDUB4.8 TGTGGGCTGTGTCTGTTGAATACCCAGCGATGCAAGGGGACACACCCTGTGACTCCTTCC  −96 hDUB8.2 TGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTCATTCC  −96 ********************* ********************************* **** hDUB4.5 TGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGGGGTGTTC  −36 hDUB4.8 TGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGGGGTGTTC  −36 hDUB8.2 TTAATTGAGTGCTGATATTTGATTGGTTTATCGCGCACCTGATGGGTGGGTGGGGTGTTC  −36 * ************************ ***************** *************** hDUB4.5 GCGGTTGGTGGGGTTGACTTACAGAAGGGCTGATG                             0 hDUB4.8 GCGGTTGGTGGGGGTGACTTACAGAAGGGCTGATG                             0 hDUB8.2 GCGGTTGGTGGGGGTGAGTTATATAAGGGCTGATG                             0 ************* *** *** * ***********

TABLE 28 CLUSTAL W (1.81) multiple sequence alignment of core amino acids of hDUBs (8.5: Seq ID NO.30; 8.7: Seq ID NO.34; 8.1: Seq ID NO.26; 4.2: Seq ID NO.10; 4.3: Seq ID NO.12; 4.5: Seq ID NO.14; 4.1: Seq ID NO.6; 8.3: Seq ID NO.28; 8.11: Seq ID NO.38; 8.8: Seq ID NO.36; 8.6: Seq ID NO.32) 8.5 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSEARVDLCDDLAPVAR  60 8.7 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSEARVDLCDDLAPVAR  60 8.1 MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVAR  60 4.2 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVAR  60 4.3 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVAR  60 4.5 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVAR  60 4.1 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVAR  60 8.3 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSQLSTETRVDFCDDLAPVAR  60 8.11 MEDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSQLSTETRVDFCDDLAPVAR  60 8.8 MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVAR  60 8.6 MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVAR  60 * :*******:************* ************.*** ** *:*.*:*****.*** 8.5 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTPPLANYMLSREHSQTCQRP 120 8.7 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTPPLANYMLSREHSQTCQRP 120 8.1 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTPPLANYMLSREHSQTCQRP 120 4.2 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRH 120 4.3 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRH 120 4.5 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRH 120 4.1 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRH 120 8.3 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYVNASQQCLTYTPPLANYMLSREHSQTCHRH 120 8.11 QLAPRKKLPLSSRRPAAVGAGLQNMGNTCYVNASQQCLTYIPPLANYMLSREHSQTCHRH 120 8.8 QLAPRKKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLH 120 8.6 QLAPRKKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLH 120 *****:* ***.***********::*** * *.* *****  **:**** **.****: 8.5 KCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGH 180 8.7 KCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGH 180 8.1 KCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGH 180 4.2 KGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGH 180 4.3 KGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGH 180 4.5 KGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGH 180 4.1 KGCMLCTMQAHITRALHIPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMRKACLPGH 180 8.3 KCCMLCTMEAHITWPLHIPGHVIQPSQALAAGFHRGKQEAALEFLMFTVDAMKKACLPGH 180 8.11 KCCMLCTMEAHITWPLHIPGHVIQPSQALAAGFHRGKQEAALEFLMFTVDAMKKACLPGH 180 8.8 KCCMFCTMQAHITWALYRPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGH 180 8.6 KCCMFCTMQAHITWALYRPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGH 180 * **:***:**** .*: *********.********:** . **********:******* 8.5 KQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQL 240 8.7 KQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQL 240 8.1 KQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQL 240 4.2 KQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQL 240 4.3 KQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQL 240 4.5 KQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQL 240 4.1 KQVDRHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQL 240 8.3 KQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFGPYLDIALDIQEAQSVKQALEQL 240 8.11 K----------------------QILILVWKRFSDVTG---------------------- 196 8.8 KQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGISDTFDPYLDIALDIQAAQSVKQALEQL 240 8.6 KQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGISDTFDPYLDIALDIQAAQSVKQALEQL 240 *                      **  *  : :**. . 8.5 VKPEELNGENAYHCGLCLQRAPVSKTLTLHTFAKERILETQRPWVVTRHKLAKSVQYAES 300 8.7 VKPEELNGENAYHCGLCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKLAKNVQYPEC 300 8.1 VKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPEC 300 4.2 VKPEELNGENAYHSGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPEC 300 4.3 VKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPEC 300 4.5 VKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIDKNVQYPEC 300 4.1 VKPEELNGENAYHCGVCLQRAPASKTLTLHNSAKVLILVLKRFPDVTGNKIAKNVQYPEC 300 8.3 VKPEELNGENAYHC---------------------------------GNKIAKNVQYPEC 267 8.11 ------------------------------------------------NKIAKNVQYPEC 208 8.8 VKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKC 300 8.6 VKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKC 300                                                 :*: *.***.:. 8.5 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAKVTACSIT 360 8.7 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAKVTACSIT 360 8.1 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSII 360 4.2 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTAASIT 360 4.3 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTAASIT 360 4.5 LDMKLYMSQTNSGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSIT 360 4.1 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYSSYVKAQEGQWYKMDDAEVTASSIT 360 8.3 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKVQEGQWYKMDDAEVTASGIT 327 8.11 LDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKVQEGQWYKMDDAE------- 261 8.8 RDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGIT 360 8.6 RDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGIT 360  **: **** *:*******************:*** ****.** ********: 8.5 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL 420 8.7 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL 420 8.1 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPEL 420 4.2 SALSQQAYVLFYIQKSEWERHSESVSRGREPRALGTEDTDRRATQGELKRDHPCLQAPEL 420 4.3 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL 420 4.5 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL 420 4.1 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGVEDTDRRATQGELKRDHPCLQAPEL 420 8.3 SVLSQQAYVLFYIHKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDYPCLQVPEL 387 8.11 --------------KSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDYPCLQVPEL 307 8.8 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPEL 420 8.6 SVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPEL 420               *********************.***** *.*******:****.*** 8.5 DERLVERATQESTLDHWRFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHP 480 8.7 DERLVERATQESTLDHWRFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHP 480 8.1 DEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHP 480 4.2 DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHP 480 4.3 DEHLVERATQESTLDRWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHP 480 4.5 DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHP 480 4.1 DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRRVEGTVPPDVLVIHQSKYKCRMKNHHP 480 8.3 DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKLEGTLPPNVLVIHQSKYKCGMKNHHP 447 8.11 DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKLEGTLPPNVLVIHQSKYKCGMKNHHP 367 8.8 DEHLVERATQESTLDHWKFPQKQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHP 480 8.6 DEHLVERATQESTLDHWKFPQKQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHP 480 **:************:*:* *:********** ::***:**:.********** ****** 8.5 EQQSSLLNLSSTTRTDQESVNTGTLASLQGRTRRSKGKNKHSKRALLVCQ           530 8.7 EQQSSLLNLSSTTRTDQESVNTGTLASLQGRTRRSKGKNKHSKRALLVCQ           530 8.1 EQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ           530 4.2 EQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ           530 4.3 EQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ           530 4.5 EQQSSLLNLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ           530 4.1 EQQSSLLNLSSTTPTDQESMNTGTLASLRGRTRRSKGKNKHSKRALLVCQ           530 8.3 EQQSSLLNLSSTNPTDQESMNTGTLASLQGRTRRAKGKNKHCKRALLVCQ           497 8.11 EQQSSLLNLSSTNPTDQESMNTGTLASLQGRTRRSKGKNKHCKRALLVCQ           417 8.8 EQQSSVLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ           530 8.6 EQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ           530 *****:*****:. *.***:********:* :**:**:***.**:*****

TABLE 29 CLUSTAL W (1.81) multiple sequence alignment of putative promoter sequences of hDUBs (upstream of ATG initiation codon) 8.9 TGACGTGTGTGAAAACTACAGTGTGATGAGCATGACTTGCAGACAGGTTATCGATTGGGC 60 8.10 -GACGTGTGTGAAAACTACAGTGTGACGAGCATGACTCGCAGACAGGTTATCGATTGGGC 59 8.3 ----------------------------------------------GATATCAATACGGC 14 8.11 ----------------------------------------------GATATCAATACGGC 14 4.2_a -----------------------------------------------TTATCGATTGGGC 13 4.5 --------------------------TGAGCATGACTGGCAGACAGCTTATCGATTGGGC 34 4.3 ------------------------GATGAGCATGACTGGCAGACAGCTTATCGATTGGGC 36 4.2_b ----------------------GTGATGAGCATGACTGGCAGACAGCTTATCGATTGGGC 38 4.4 ----------------------GTGATGAGCATGACTGGCAGACAGCTTATCGATTGGGC 38 4.1_b -------------------AGTGCAATGAGCATGACACGCAGGCAGGATATCAATTCGGC 41 8.1 -----------------------CAATGAGCATGACACGAAGACAGAATATCAATTCGGC 37 8.7 -----------------------CAATGAGCATGACACGAAGACAGAATATCAATTCGGC 37 8.6 ---------------------TGTGATGAGCATGACTCGCAGACAGGTTATCGATTGGGC 39 8.8 ---------------------TGTGATGAGCATGACTCGCAGACAGGTTATCGATTGGGC 39 8.5 -----------------TCTCTGTCAGAACCATGGTACTCTGTTGTGGTGTGAAAGTAGC 43 8.2 ---------TCACATCTTCTCGGCCAGATGCAGCCTTTGCTGAAATCCAGCGGACTTCTC 51 4.1_a ----------------------------AGTATAGCAGAGCAGAGAGCTG-GAAGGGACC 31                                                      *     * 8.9 T-CCCCTCAAAAT-TAGTTATGAGCATTAAAGGACACCGATGCCC---AGGTCCCGGCTG 115 8.10 T-CCCCTCAAAAT-CAGTTATGAGCATTAAAGCACACCGATCCCC---AGGTCCCGGCTC 114 8.3 T-CACCTCAAAAG-CAGTTATGAGCATTAAAGGACACCCATGCCT---AGGTCCCGCTTA 69 8.11 T-CACCTCAAAAG-CAGTTATGAGCATTAAAGGACACCCATGCCT---AGGTCCCGGTTA 69 4.2_a T-CCCCTCAAAAT-CGGTTATGAGCATTCAAGCACACCGATGCCC---AGGTCCCGGCTG 68 4.5 T-CCCCTCAAAAT-CGGTTATGAGCATTCAAGCACACCGATGCCC---AGGTCCCGGCTG 89 4.3 T-CCCCTCAAAAT-CGGTTATGAGCATTCAAGCACACCGATGCCC---AGGTCCCGGCTG 91 4.2_b T-CCCCTCAAAAT-CGGTTATGAGCATTCAAGCACACCGATGCCC---AGGTCCCGGCTG 93 4.4 T-CCCCTCAAAAT-CGGTTATGAGTATTCAAGCACACCGATGCCC---AGGTCCCGGCTG 93 4.1_b T-CCCCTCAAAAG-CTGTTATGAGCATTAAAGGACACCAATGCCT---AGTTCCCGGTTA 96 8.1 T-CACCTCAAAT--CAGTTGTGAGCATTAAAGAAAACCAATTCCT---AGGTCCCGCTTA 91 8.7 T-CACCTCAAAAG-CAGTTATGAGCATTAAAGGACAACAATTCCT---AGGTCCCGCTTA 92 8.6 T-CCCCTCAAAAT-CAGTTAGGAACATGAAAGCACACCGATGCCC---AGGTCCTGGCTG 94 8.8 T-CCCCTCAAAAT-CAGTTAGGAACATGAAAGCACACCGATGCCC---AGGTCCTGGCTG 94 8.5 CACAGATCATCTG-TAGAT-TAAGGGGTGTGGCTTTGTTCCAACA---AAGCTTTATTTA 98 8.2 TCCCTGAGAAGTCACAACTCTCAACTGAGACCCGCGTCGACTTCTGCGATGATTTGGCGC 111 4.1_a TGCATCCCTAAT----GATATAAGAAAGTATCTGTACTAGCCCTGA--ATGGTATAACTA 85   *               *   *                         * 8.9 CAGGAATAAGAC-CCTCCGACGTCTTGTGTGAAGCCACGGC--ATCTGGATTGCTCATGC 172 8.10 CAGGAATAAGAC-CCTCCAGCGTCTTGTGTGAAGCCACGGC--ATGTGGATTGCTCATGC 171 8.3 AAGAGATAAGAC-TCTCCCACACCCTGTGTGAAGCCACGGC--ATGTGGATTGCTCATGC 126 8.11 AAGAGATAAGAC-TCTCCCACACCCTGTGTGAAGCCACGGC--ATGTGGATTGCTCATGC 126 4.2_a CAGGAATAAGAC-CCTCCAGGGTCTTGTGTGAAGCCTCGGC--ATCTGCATTGCTCATGC 125 4.5 CAGGAATAAGAC-CCTCCAGGGTCTTGTGTGAAGCCTCGGC--ATCTGCATTGCTCATGC 146 4.3 CAGGAATAAGAC-CCTCCAGGGTCTTGTGTGAAGCCTCGGC--ATCTGCATTGCTCATGC 148 4.2_b CAGGAATAAGAC-CCTCCAGGGTCTTGTGTGAAGCCTCGGC--ATCTGCATTGCTCATGC 150 4.4 CAGGAATAAGAC-CCTCCAGGGTCTTGTGTGAAGCCTCGGC--ATCTGCATTGCTCATGC 150 4.1_b AAACGATAAGAC-TCTCGCACACCCTGTGGGAAGCCACGGC--ATCTGGATTGCTCATGC 153 8.1 AAGAGATAAGAC-CATCCAACAACCTGTGTGAAGCCACCGC--ATCTGGCTTGCTCATGA 148 8.7 AAGAGATAAGAC-CATCCAACACCCTGTGTGAAGCCACGGC--ATCTGGATTGCTCATGT 149 8.6 CAGGAATAAGAT-CCTCCGACGTCTTGTGTGAAGCCACGAC--ATCTGCATTGCTCATGC 151 8.8 CAGGAATAAGAT-CCTCCGACGTCTTGTGTGAAGCCACGAC--ATCTGCATTGCTCATGC 151 8.5 CAAACACAGGCTGTGGGCTGGATTTGGCCTGCAGCTGTAGT--TTGTG----ATCCTTGA 152 8.2 CTGTGGCAAGAC--AGCTTGCTCCCAGGGAGAAGCTTCCTCTGAGTAGCAGGAGACCTGC 169 4.1_a CAG-GTTAAATT---TACGTGAAAAAGAAATCAACTTCTGCCTTGTTTAAGCAAACTTA- 140        *                  *     * *                    * * 8.9 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTCCTGCCTGTGGAGCACCTCT 228 8.10 TTCTG-G-CGATCATTCTCCTGAAAACG--GTGGCTCCTTTCTCCCTGTGGAGCACCTTT 227 8.3 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCACTGTGGAGCATCTTT 182 8.11 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCACTGTGGAGCATCTTT 182 4.2_a TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCCCTGTGGACCATCTTT 181 4.5 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCCCTGTGGAGCATCTTT 202 4.3 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCCCTGTGGAGCATCTTT 204 4.2_b TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCCCTGTGGAGCATCTTT 206 4.4 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTCCTTTCTCCCTGTGGAGCATCTTT 206 4.1_b TTCTG-G-GGATCATTTTCCTGAAAATC--GTGGCTGCTTTCTCCCTGTGTAGCATCTTT 209 8.1 TTCTG-G-GGATCATTCTCCAGAAAATG--GTGGCTCCTTTCTCCCTGTGGAGCATCTTT 204 8.7 TTCTG-G-GGAACATTCTTCTGAAAATG--GCGGCTCCTTTCTCCCTGTGGAGCATCTTT 205 8.6 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTTCTTTCTCCCTGTGGAGCATCTTT 207 8.8 TTCTG-G-GGATCATTCTCCTGAAAATG--GTGGCTTCTTTCTCCCTGTGGAGCATCTTT 207 8.5 TTCAG-ACAGTTTAGCAAGGCTGAAAAG--AACACCCACACCCCCTTGTTACCCACAGAT 209 8.2 TGCGGTGGGGGCTGGGCTCCAGAATATG--GGAAATACCTGCTACGTG---AACGCTTCC 224 4.1_a TTCAG---GCATTAATTTTATAAATATGTAGAGAATACATACTCCTTAT-GAGCAGA--- 193 * * *                  * *               *    *      * 8.9 CTA-AGCA-GTGC-CCTTTCTTCACCCAGGACACTTTACATCAGGCACAGAAAGCCTTCT 285 8.10 CTA-AGCA-GTGC-CCTTTCTTCACCCAGGACACTTTACATCAGGCACAGAAAGCCTTCT 284 8.3 GTA-AGCA-GTGT-CCTTTCTTCCCCCAGGACACTTTACTTCAGGCACAGGAAGCCTTCT 239 8.11 CTA-AGCA-GTGT-CCTTTCTTCCCCCAGGACACTTTACTTCAGGCACAGGAAGCCTTCT 239 4.2_a CTA-AGCA-GTGCTCTTTTCTTCCCCCAGGACACTTTACATCCGGCACAGGAAGCCTTCT 239 4.5 CTA-AGCA-GTGCTCTTTTCTTCCCCCAGGACACTTTACATCCGGCACAGGAAGCCTTCT 260 4.3 CTA-AGCA-GTGCTCTTTTCTTCCCCCAGGACACTTTACATCCGGCACAGGAAGCCTTCT 262 4.2_b CTA-AGCA-GTGCTCTTTTCTTCCCCCAGGACACTTTACATCCGGCACAGGAAGCCTTCT 264 4.4 CTA-AGCA-GTGCTCTTTTCTTCCCCCAGGACACTTTACATCCGGCACAGGAAGCCTTCT 264 4.1_b CTA-AGCA-GTGCTCCTTTCTTCCCACAGGAAACTTTACATCAGGCACAGGAAGCTTTCT 267 8.1 CTA-AGCA-GTGC-CCTTTCTTCCCCCAGGACACTTTACATGAGGTGCAGGAAGCCTTCT 261 8.7 CTA-AGCA-GTGCTCCTTTCTTCCCCCAGGACACTTTACATCAGGCATAGGAAGCCTTCT 263 8.6 CTA-AGCA-GTGCTCCTTTCTTCCCCCAGGACACTTTACATCAGGCGCACGAAGCCTTCT 265 8.8 CTA-AGCA-GTGCTCCTTTCTTCCCCCAGGACACTTTACATCAGGCGCACGAAGCCTTCT 265 8.5 GGGTGGGA-CTGTGTTGGCCAGAGACCGAGAGACGGGTGCTCACAGGGGAACGTACAGCA 268 8.2 CAGCAGTGTCTGACATACACACCGCCCCTTGCCAACTACATGCTGTCCCGGGAGCACTCT 284 4.1_a -AACAATGTTTGCGCCATATGGTCCATGATGGGTGTTCAATAATGTGTGATGATGATAAT 252           **                            * 8.9 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGATAAGAAACGGGGCCAAACATCACAG 345 8.10 GATGGAGCACACCTGGCCCATGAAAAAACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 343 8.3 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAATGGGGCCAAAGGTCACAG 298 8.11 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAATGGGGCCAAAGGTCACAG 298 4.2_a GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 298 4.5 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 319 4.3 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 321 4.2_b GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 323 4.4 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 323 4.1_b GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAATGGGGCCAAAGGTCACAC 326 8.1 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAAAAGGGCCAAAGGTCACAG 320 8.7 GATGAAGTACACCTGGCCCATGAAAAGACAAAGGA-AAGAAACAGGGCCAAAGGTCACAG 322 8.6 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 324 8.8 GATGGAGCACACCTGGCCCATGAAAAGACAAGGGA-AAGAAACGGGGCCAAAGGTCACAG 324 8.5 TGTAGAGGCCGGAAGGTGCTCCAGGGCACAAGTGT-GGGAAAGTGGGACATACGGGGAAG 327 8.2 CAAACATGTCATC--GTCACAAGTGCTGCATGCTCTGTACCATGGAAGCTCACATCACAT 342 4.1_a AATGAAGACAATAGTGACAAATAAAAGAAAATAAA-AAGCAGTGAAACAAAGTGGTTTAA 311      *         *             *                            * 8.9 TCCTCTCATTCCACCGTCCTCCTTAAAATCATCCTAATTTCATGGGCTCT-GCGGCCACG 404 8.10 TCCTCTCATTCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAGGCCACG 402 8.3 TCCTCTCATTCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAAGCCAGG 357 8.11 TCCTCTCATTCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAGGCCACG 357 4.2_a TCCTCTCATCCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAAGCCAGG 357 4.5 TCCTCTCATCCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAAGCCAGG 378 4.3 TCCTCTCATCCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAAGCCAGG 380 4.2_b TCCTCTCATCCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAAGCCAGG 382 4.4 TCCTCTCATCCCATCATCCTCCTTAAAATCATCCTAATTTCATGGGCCCT-GAAGCCAGG 382 4.1_b TCCTCTCATTCCATCATACTCCTTAAAATCATCCTAATTTCATGGGTCCT-GAAGCCAGG 385 8.1 TCCTCTCATTACATCATCATCCTTAAAATCATCCTAATTTCATGAGCCCT-GAAGACAGG 379 8.7 CCCACTCATTTCATCACCATCCTTAAAATCATCCTAATTTCATGGGCCAT-GAAGCCAGG 381 8.6 TCCTCTCATTCCATCATCCTCCTTAAAATCATCCGAATTTCATGAGCCCTTGAAGCCAGG 384 8.8 TCCTCTCATTCCATCATCCTCCTTAAAATCATCCGAATTTCATGAGCCCTTGAAGCCAGG 384 8.5 TTTCCAGAAAGCATGATGTCAAGTTGGAG-GTGGAGCGCTGCTGGGCTTGTGAAGGGTCT 386 8.2 GGCCCC---TCCA-CATTCCTGGCCATGTCATCCAGCCCTCACAGGCATT---------G 389 4.1_a TAGCTATACATAGTTATT-TTGTTGAAAGATTCTGCTGCTAATATTATTCAATATTTTTG 370                                *       * 8.9 GCTGTTTCTTTACACCTCGAGACCTTGGCGCCAGGCCTCAATTCTGCCCCGGTGCTTACT 464 8.10 GCTGTTTCTTTACACCTCGAGACCTTGGCGCCGGGCCTCAATTCTGCTCCAGTGCTTACT 462 8.3 GCTGTTTCTTTAAAACTAGAGGCCTTGGCGCCGTGCCTCAATTCTGCCCTGTTCCTTACT 417 8.11 GCTGTTTCTTTAAAACTAGAGGCCTTGGCGCCGGGCCTCAATTTTGCCCTGTTCCTTACT 417 4.2_a GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCCGCCCTGTTCCTTACC 417 4.5 GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCCGCCCTGTTCCTTACC 438 4.3 GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCCGCCCTGTTCCTTACC 440 4.2_b GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCCGCCCTGTTCCTTACC 442 4.4 GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCCGCCCTGTTCCTTACC 442 4.1_b GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCTGCCCTGTTGCTTACT 445 8.1 GCTGTTTCTTTACACCTAGAGGCCTTGGCGCCGGGCCTCAATTCTGCCCTGTTCCTTACT 439 8.7 GCTGTTTCTTTACACCCAGAGGCCTTGGCGCCGGGCCTCAATTCTGCCCTGTTCCTTACT 441 8.6 GCTGTTTCTTTACACCCAGAGGCCTTGGCGCCGGGCCTCAATTCTGCCCTGTTCCTTACT 444 8.8 GCTGTTTCTTTACACCCAGAGGCCTTGGCGCCGGGCCTCAATTCTGCCCTGTTCCTTACT 444 8.5 CGAGTCCAAGTGAGGGCGGGTTGTGAAGGGTCTCCTCTCAAAGCTGACCGACTTCGGGAC 446 8.2 GCTGCTGGCTTCCATAGAGGCAAGCAGGAAGCTGCCCTTGAATTTCTCATGTTCACTGTG 449 4.1_a TATGCTGGC--GCAAATAAGGAAATTTACATCGTCTAATAAAAATTATTTATCAATTTAT 428    *                           *        * 8.9 GTCTAAGACATTTTGGGAAAATCCCTAGAGC-CTGGATCTTCAATCCTGGTAAGCCAGAG 523 8.10 GTCTAAGACATTTTGGGAGAATCCCTAGAGC-CTAGATCTTCAATCCTGGTAAGCCAGAG 521 8.3 GTCTAAGAAAGGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGGTAAGCCAGAG 476 8.11 GTCTAACAAAGGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGGTAAGCCAGAG 476 4.2_a GTCTAAGACATGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGCTAAGCCAGAC 476 4.5 GTCTAAGACATGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGCTAAGCCAGAC 497 4.3 GTCTAAGACATGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGCTAAGCCAGAC 499 4.2_b GTCTAAGACATGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGCTAAGCCAGAC 501 4.4 GTCTAAGACATGTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGCTAAGCCAGAC 501 4.1_b CTCTAAGACATGTTGGGAAAGTCCCAAGAGC-CAGGATCTTCATTCCTGGTAAGGCAGAC 504 8.1 GTCTAAGACATTTTGGGAAAATCACTAGAGC-CAGGACCTTCATTCCTGGTAAGCCAGAG 498 8.7 GTCTAAGACATTTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGGTAAGCCAGAG 500 8.6 GTCTAAGACATTTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGGTAAGCCAGAG 503 8.8 GTCTAAGACATTTTGGGAAAATCCCTAGAGC-CAGGATCTTCATTCCTGGTAAGCCAGAG 503 8.5 TTCCCAGGGATTGTTGTTGAGTCCACGGCTCACGTCGTCCACACTC-TGAGGTCCCATGG 505 8.2 GATGCCATGAAAAAGGCATGCCTTCCCGGGCACAAGCAGGTAGATC--ATCACTCCAAGG 507 4.1_a AAAACAGTAAAAATTTCATAG--AATGGGGCTAAGAATCTGCACTGCAAACTAACTCTTT 486          *                 *  *             * 8.9 AGCCTGGAGACACACCCAAATTATGTCCCTCTTAGTTCAGGGAACATGTCCATTTTCGTC 583 8.10 AGCCTGAAGACACACCCAAATTATGTCCCTCTTAGTTCAGGGAACATGTCCATTTTCGTC 581 8.3 AGCCTGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGTC 536 8.11 AGCCTGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGTC 536 4.2_a AGCCGGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGGC 536 4.5 AGCCGGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGGC 557 4.3 AGCCGGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGGC 559 4.2_b AGCCGGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGGC 561 4.4 AGCCGGAAGACACACCCAAATTCTGTCCCTCTTACTTCAGGGAACATGTCCACTTTCGGC 561 4.1_b AGAATGAAGACACACCAAAATTCTGTCCCTCTTAATTCAGGGAACGTGTCCACTTTCGTC 564 8.1 AGCCGAAAGACACACCCAAATTCTGTCCCTCTTAGTTCAGGGAACAGGTCTACTTTCGTC 558 8.7 AGCCTGAAGACACACCCAAATGCTGTCCCTCTTAGTTCAGGGAACATGTCCACTTTCGTC 560 8.6 AGCCTGAAGACACACCCAAATGCTGTCCCTCTTAGTTCAGGGAACATGTCCACTTTCGTC 563 8.8 AGCCTGAAGACACACCCAAATGCTGTCCCTCTTAGTTCAGGGAACATGTCCACTTTCGTC 563 8.5 ATTCGCCACCCACATTCATCTACTCTCCTCTCTCTCTTCCTTACCTCCTTTGATCCCCTC 565 8.2 ACACCACCCTCATCCACCAAATATTTGGAGGGTACTGGAGATCTCAAATCAAGTGTCTCC 567 4.1_a CAGTTGATTTTATGCACAGAAATTATTGAGAATCCCCTTATCTAGATCCAACAGATCTGG 546            *            * *     *                       * 8.9 AGCATTAAAATTTTGGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCATAACTG 643 8.10 AGCACTAAAATTTTTGCACCAAATGTGCTAACTGCAATTCCACCATGCAATGCGTAACTG 641 8.3 AGCATTACAATTTTTGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCATAAATG 596 8.11 AGCATTACAATTTTTGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCATAAATG 596 4.2_a AGCATTACAATTTTGGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCGTAACTG 596 4.5 AGCATTACAATCTTGGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCGTAACTG 617 4.3 AGCATTACAATTTTGGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCGTAACTG 619 4.2_b AGCATTACAATTTTGGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCGTAACTG 621 4.4 AGCATTACAATTTTGGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCGTAACTG 621 4.1_b AGAATTAAAATTTTTGCACCAAATGTGCTAACTGGAATTCCACCATACAATGCATAACTG 624 8.1 AGCATTACAATTTTTGCACCAAATGTGCTAACTGCAATTCCACCATACAATGCATAACTG 618 8.7 AGCATTACAATTTTTGCACCAAATGTACTAACTGCAATTCCACCATACAATGCATAACTG 620 8.6 AGCATTACAATTTTTGCACCAAATGTACTAACTGCAATTCCACCATACAATGCATAACTG 623 8.8 AGCATTACAATTTTTGCACCAAATGTACTAACTGCAATTCCACCATACAATGCATAACTG 623 8.5 CCCA-TATGCTACCCCCCGCTACCAAACCTCTGCCAAGCATACCACCCTATCGGCAGCTA 624 8.2 ACTGCCACGGCATTTCAGACACTTTTGGCCCTTACCTGGACATCGCCCTGGATATCCAGG 627 4.1_a GCTTACATAGGTGCTATCAAGACTTAAGGAAGAAAATTTTCCTGACTCTATCCATACCTC 606       *                                        * 8.9 GAAATAGAGGCAACATCTCATATCCTGAACAATTCATGTG------AGAATCTAGGAGAC 697 8.10 TAAATGGAGGCAACATCTCAGATCCTGAACAATCGATGCG------AGAATCCAGGAGAC 695 8.3 GAAATGGAGGGAACATCTCAGATCCTGAACAATCGATGCG------AGAATCCAGGAGAT 650 8.11 GAAATGGAGGGAACATCTCAGATCCTGAACAATCGATGCG------AGAATCCAGGAGAT 650 4.2_a GAAATGGAGGCAACATCTCCGATCCTGAACGATCGATGCG------AGAATCCAGGATAT 650 4.5 GAAATGGAGGCAACATCTCCGATCCTGAACGATCGATGCG------AGAATCCAGGATAT 671 4.3 GAAATGGAGGCAACATCTCCGATCCTGAACGATCGATGCG------AGAATCCAGGATAT 673 4.2_b GAAATGGAGGCAACATCGCCGATCCTGAACGATCGATGCG------AGAATCCAGGATAT 675 4.4 GAAATGGAGGCAACATCTCCGATCCTGAACGATCGATGCG------AGAATCCAGGATAT 675 4.1_b GAAATGGAGGGAAAATCCCAGATCATGAACAATCAAAGCG------AGAATCCAGGAGAC 678 8.1 GAAATGGAGGGAACATCTCAGATCATGAACAATCGATGAG------AGAATCCAGGAGAT 672 8.7 GAAATGGAGGGAACATCTCAGAGCATGAACAACTGATGCG------AGAATCCAGGAGAT 674 8.6 GAAATGGAGGGAACATCTCAGACCATGAACAATCGATGAG------AGAATCCAGGAGAC 677 8.8 GAAATGGAGGGAACATCTCAGACCATGAACAATCGATGAG------AGAATCCAGGAGAC 677 8.5 CTCTTCACTCCCA-ACTACATCGGCCGCATCNNNNNNNNN------NNNNNNNNNNNNNN 677 8.2 AAGCTCAGAGTGTCAAGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGAACTCAATGGAG 687 4.1_a CAATTAGTAATAGATCTAGAGATTTAAAACTGAAATCCAGACCTC-CTGCTTCCATGTGC 665     *                       * 8.9 ACACCGCTTATTTTTGCCTTTTCCCACTGAAACAATGGCTAGTATTAACAATGTTATGCT 757 8.10 ACACGGCTTATTTTTGCCTTTTCCCACTGAAACAAGGGCCAGTATTAACAATCTTATGCT 755 8.3 ACACGGCTGATTTTTGCGTTTTCCCTGTGAAACAAGGGCCAGTATTAAAAATGGTATGCT 710 8.11 ACACGGCTGATTTTTGCGTTTTCCCTGTCAAACAAGGGCCAGTATTAAAAATGGTATGCT 710 4.2_a GCACGGCTTATTTTGGCCTTTTCCCACTGAAACAAGGGCCAGTATTAAAAATGGCACGCT 710 4.5 GCACGGCTTATTTTGGCCTTTTCCCACTGAAACAAGGGCCAGTATTAAAAATGGCACGCT 731 4.3 GCACGGCTTATTTTGGCCTTTTCCCACTGAAACAAGGGCCAGTATTAAAAATGGCACGCT 733 4.2_b GCACGGCTTATTTTGGCCTTTTCCCACTGAAACAAGGGCCAGTATTAAAAATGGTACGCT 735 4.4 GCACGGCTTATTTTGGCCTTTTCCCACTGAAACAAGGGCCAGTATTAAAAATGGCACGCT 735 4.1_b ACACGGCTTATTTTGGCCTTTTCCCACTGAAACAAGGACCAGTATTAAAAATGGTATGCT 738 8.1 ACACGGCTTATTTTTGCCTTTTCCCTGTGAAACAAGGGCAAGTATTAAAAACTTTATGCT 732 8.7 ACACGGTTTATTTTTGCCATTTCCCAGTGAAACAAAAGCCAGTATTAAAAAGGTTATGCT 734 8.6 ACACGGCTTATTTTTGCCTTTTCCCTGTGAAACAAGGGCCAGCATTAAAAAGGTTATGCT 737 8.8 ACACGGCTTATTTTTGCCTTTTCCCTGTGAAACAAGGGCCAGCATTAAAAAGGTTATGCT 737 8.5 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 737 8.2 AGAATGCCTATCATTGTGGTCTTTGTCTCCAGAGGGCGCCGGCCTCCAAGACGTAAACTT 747 4.1_a AGTGTCCTTTCACTGTCCTGTTTTGCTTCACTTGATGAAGAGGATTTGAGAATAAATGAC 725 8.9 ATCCTTGGTTTCACTCCCCACTTTTAAATCTCTCGGATGTTTACTTCT-TGAGACAGG-- 814 8.10 ATCCTGGGTTTCACTCTCTGCTTTTAAATCTCTCCAATGTTTTCTTCT-TGAGACAGG-- 812 8.3 ATCCTCTGTTTCACTCCCTGCTTTTAAGTCTCC--GATGTTT-CTTCT-TAAGACAGG-- 764 8.11 ATCCTCTGTTTCACTCCCTGCTTTTAAGTCTCC--GATGTTT-CTTCT-TAAGACAGG-- 764 4.2_a ATCCTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGT-TTCTCCC-TGAGACAGG-- 766 4.5 ATCCTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGT-TTCTCCC-TGAGACAGG-- 787 4.3 ATCCTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGT-TTCTCCC-TGAGACAGG-- 789 4.2_b ATCCTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGT-TTCTCCC-TGAGACAGG-- 791 4.4 ATCCTCTGTTTCACTCCCTGCTTTTAAACGTCTCTGATGT-TTCTCCC-TGAGACAGG-- 791 4.1_b ATACTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGT-TTCTTCT-TGAGACAGG-- 794 8.1 GTCTTCTATTTCACTGCCTGCTTTTAAACGTCTCCGATGTATTCTTCT-TGAGAAAGG-- 789 8.7 ACCCTCTGTTTCACTCACTGCTTTTAAACGTCTCCGATGTTTTCTTCT-TCAGACAGG-- 791 8.6 ATCTTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGTTTTCTTCT-TCAGACAGG-- 794 8.8 ATCTTCTGTTTCACTCCCTGCTTTTAAACGTCTCCGATGTTTTCTTCT-TCAGACAGG-- 794 8.5 NNNNNNNNNNNNNNNNNCTGCTTTTAAACGTCTCCGATGTTTTCTTCT-TCAGACAGG-- 794 8.2 TACACACTTCTGCCAAGATCCTCATCCTCGTATTGAAGAGATTCTCCGATGTCACAGGCA 807 4.1_a CACATGATTCAACTCCTCCTCAGCTCTGAGCAAT-ATAGCCCTGTCCTGGCAAACAAGAA 784                     *   *                   * *      * * * 8.9 GCGTC-ACTGCCGTCACCCACGCTTTTCTACGGT------GTAATTTTTGTTGTTCGCTT 867 8.10 GCCTC-ACTCCCGTCACCAGGGCTTTTCTACGGT------GCAATTTTCGGTGTTTGCTT 865 8.3 GCCTC-ACTTCCTTCCCCCTGACTTTTCTACGGT------ATAATTTTCGTTGTTTGCTT 817 8.11 GCCTC-ACTTCCTTCCCCCTGACTTTTCTACGGT------ATAATTTTCGTTGTTTGCTT 817 4.2_a GCCTC-ACTTCCGTCAGCCGGGCTTTTCCACGGT------ATAATTTTCCTTGTTTGCTT 819 4.5 GCCTC-ACTTCCGTCAGCCGGGCTTTTCCACGGT------ATAATTTTCCTTGTTTGCTT 840 4.3 GCCTC-ACTTCCGTCAGCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 842 4.2_b GCCTC-ACTTCCGTCAGCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 844 4.4 GCCTC-ACTTCCGTCAGCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 844 4.1_b GCCTC-ACTGCCGTCCGCCGGGCTAT-CTAGAGT------ATAATTTTCAGTGTTTGCTT 846 8.1 GCCTC-ACTACTGTCACCTGGGCTTTTCTAAGGT------ATAATTTTCCTTGTTTGCTT 842 8.7 GCCTC-ACTCCCGTCACCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 844 8.6 GCCTC-ACTCCCGTCACCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 847 8.8 GCCTC-ACTCCCGTCACCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 847 8.5 GCCTC-ACTCCCGTCACCCGGGCTTTTCTACGGT------ATAATTTTCCTTGTTTGCTT 847 8.2 ACAAA-ATTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGCAGCCATACATGTCT 866 4.1_a GCTCCTGCAGTAGTAGAGGAGGCAAATATACGTT----CACTAATCTAACATACAAG--- 837  *                               *        *        *       * 8.9 TTGTCAAATTTAGAAATTTTCATTTCA--TCTCTATCAAATGTTGCTCCATT----ATCA 921 8.10 TTGTCAAATTTAGAACTTTTCATTTCA--TCTCTATCAAATGTTGATCCATT----ATCA 919 8.3 TTGTCAAAATTAGAACTTTTTATTTCA--TCTCTATGAAATGTTGATCCATT----ATCA 871 8.11 TTGTCAAAATTAGAACTTTTTATTTCA--TCTCTATGAAATGTTGATCCATT----ATCA 871 4.2_a TTGTCCAAATTAGAACTTTTTATTTCA--CCTCTAGGAAACGTTGATCCATT----ATCA 873 4.5 TTGTCCAAATTAGAACTTTTTATTTCA--CCTCTAGGAAACGTTGATCCATT----ATCA 894 4.3 TTGTCCAAATTAGAACTTTTTATTTCA--TCTCTAGGAAACGTTGATCCATT----ATCA 896 4.2_b TTGTCCAAATTAGAACTTTTTATTTCA--TCTCTAGGAAACGTTGATCCATT----ATCA 898 4.4 TTGTCCAAATTAGAACTTTTTATTTTA--TCTCTAGGAAACGTTGATCCATT----ATCA 898 4.1_b TTGTCAACCTTAGAACATTTTATTTCG--TCTCTATGAAATGTTGATCCATT----ATCA 900 8.1 TTGTCAAAATTAGAACATTTTATTTCA--TATCTATGAAATGTTGATCCATT----ATCA 896 8.7 TTGTCAAAATTAGAACTTTTTATTTCA--TCTCTATGAAATGTTGATCCATT----ATCA 898 8.6 TTGTCAAAATTAGAACTTTTTATTTCA--TCTCTATGAAATGTTGAGCCATT----ATCA 901 8.8 TTGTCAAAATTAGAACTTTTTATTTCA--TCTCTATGAAATGTTGAGCCATT----ATCA 901 8.5 TTGTCAAAATTAGAACTTTTTATTTCA--TCTCTATGAAATGTTGATCCATT----ATCA 901 8.2 CAGCAGAACACAGGACCTCTTGTCTATGTCCTCTATGCTGTGCTGGTCCACGCCGGGTGG 926 4.1_a --GCAGTAGGCACTGTACCATAAACAAG-ACACTGTGGGGGTTCAGACCAGG---GGCAA 891   *        *                    **             *** 8.9 CATACGTATGA-AAATATTATCACGCGTGCTGTGAGATACGTTGTTTTTATTTTCATCAA 980 8.10 CATACGTATGA-AAATATTATCACCCATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 978 8.3 CATACGTATGG-AAAGACTATCACCCATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 930 8.11 CATACGTATGG-AAAGACTATCACCCATGATGTGAGATACGTTGTTTTTATTTTCATCAA 930 4.2_a CATACGTATGG-AAATATTATCACACATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 932 4.5 CATACGTATGG-AAATATTATCACACATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 953 4.3 CATACGTATGG-AAATATTATCACACATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 955 4.2_b CATACGTATGG-AAATATTATCACACATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 957 4.4 CATACGTATGG-AAATATTATCACACATGCTGTGAGATACGTTGTTTTTATTTTCATCAA 957 4.1_b CATACACATGG-AAATATTATCACCCACGGTGTCAGATACGTTGTTTTTATTTTCATCAC 959 8.1 CATACGTATGG-AAATAGTATCACCAATGCTGTGAGATAAGTTGTTTTTATTTTGGTCAA 955 8.7 CGTAAGTATGG-AAATAGTATCAGCCACGCTGTGAGATACGTTGTTTTTATTTTCATCAG 957 8.6 CATACGTATGG-AAACAGTATCACCCATGCTGTGAGATACGTTGTTTTTATTTTCATCAG 960 8.8 CATACGTATGG-AAACAGTATCACCCATGCTGTGAGATACGTTGTTTTTATTTTCATCAG 960 8.5 CGTAAGTATGG-AAATAGTATCAGCCACGCTGTGAGATACGTTGTTTTTATTTTCATCAG 960 8.2 AGTTGTCACAACGGACATTACTTCTCTTATGTCAAAGTTCAAGAAGGCCAGTGGTATAAA 986 4.1_a AGTGGGGATTG---ATAGGGCTAGTAAAGTCTAGGAAGTGTTCACTAACAAAATGTCTAA 948   *    *      * *                                *        * 8.9 TTCTTTTGTAAAACAAAGGTTATAGTTGGGATACCTTCTGATTTCTCAAGTTTTTTGTTT 1040 8.10 TTCTTTAATAAACCAAAGGTTATAGTTGGGATACCTTCTGATTTCTCAAGTTTTTTGTTT 1038 8.3 TTCTTTAATAAACCAAAGGTTATAGTTGGGATACCTTCCGATTTCTCTAGTTTTTTGTTT 990 8.11 TTCTTTAATAAACCAAAGGTTATAGTTGGGATACCTTCCGATTTCTCTAGTTTTTTGTTT 990 4.2_a TTCTTTAATAAACAAACGGTTATAGCTGGGATACCTTCTGAGTTCTCAAGTTTTTTGTTT 992 4.5 TTCTTTAATAAACAAACGGTTATAGCTGGGATACCTTCTGAGTTCTCAAGTTTTTTGTTT 1013 4.3 TTCTTTAATAAACAAAAGGGTATAGCTGGGATACCTTCTGAGTTCTCAAGTTTTTTGTTT 1015 4.2_b TTCCTTAATAAACAAAAGGTTATAGCTGGGATACCTTCTGAGTTCTCAAGTTTTTTGTTT 1017 4.4 TTC-TTAATAAACAAAAGGTTATAGCTGGGATACCTTCTGAGTTCTCAAGTTTTTTGTTT 1016 4.1_b TTC---AAGAAAAAAAAGGGTATAGTTGGGATACCTTCTGATTTCTCAAGATTTTTCTTT 1016 8.1 TTCTTTAATAAACAAAAGCTTATAGTTGGGATACCTTCTGATTTCTCAAGGTTTTTGTTT 1015 8.7 TTATTTAATAAACAAAAGCTTATAGTTGGGATACCTTTGGATTTCTCAAGTTTTTTGTTT 1017 8.6 TTCTTTAATAAACAAAAGCTTATAGTTGGGATACCTTTGGATTTCTCAAGTTTTTTGTTT 1020 8.8 TTCTTTAATAAACAAAAGCTTATAGTTTGGATACCTTTGGATTTCTCAAGTTTTTTGTTT 1020 8.5 TTATTTAATAAACAAAAGCTTATAGTTGGGATACCTTTGGATTTCTCAAGTTTTTTGTTT 1020 8.2 ATGGATGATGCCGAGGTCACTGCCTCTGGCATCACCTCTG---TCCTGAGTCAACAGGCC 1043 4.1_a TTATTAACTAAACTAAATGGTTTC-TCAACATGACCTAATTAATTGTAACTTACTATAAA 1007  *                  *         **  * *      *    * 8.9 CATGTTTTCTT------------------------------------------------- 1051 8.10 CAGGTTTTCTT------------------------------------------------- 1049 8.3 CATGTTTTCTTTCTTTTTTTTTTTTTTTTTTTT---------GAGACGGGGTCTCGCTCT 1041 8.11 CATGTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGGGTCTCGCTCT 1050 4.2_a CGTGTTTTCTT------------------------------------------------- 1003 4.5 CGTGTTTTCTT------------------------------------------------- 1024 4.3 CGTGTTTTCTT------------------------------------------------- 1026 4.2_b CGTGTTTTCTT------------------------------------------------- 1028 4.4 CCTGTTTTCTT------------------------------------------------- 1027 4.1_b CATATTTTCTT------------------------------------------------- 1027 8.1 CATGTTTTCTT------------------------------------------------- 1026 8.7 CAAGTTTTCTT------------------------------------------------- 1028 8.6 CATGTTTTCTT------------------------------------------------- 1031 8.8 CATGTTTTCTT------------------------------------------------- 1031 8.5 CAAGTTTTCTT------------------------------------------------- 1031 8.2 TATGTCCTCTTTTACATCC----------------------------------------- 1062 4.1_a TGGTTGTTTGTTCA---------------------------------------------- 1021     *  *  * 8.9 ------------------------------------------------------------ 8.10 ------------------------------------------------------------ 8.3 GTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCT 1101 8.11 GTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCT 1110 4.2_a ------------------------------------------------------------ 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 ------------------------------------------------------------ 8.10 ------------------------------------------------------------ 8.3 TCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCC 1161 8.11 TCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCC 1170 4.2_a ------------------------------------------------------------ 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 ---A-------------------------------------------------------- 1052 8.10 ---A-------------------------------------------------------- 1050 8.3 GCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTTTGTTAGC 1221 8.11 GC-ACGCGCCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTAGC 1229 4.2_a ------------------------------------------------------------ 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 ------------------------------------------------------------ 8.10 ------------------------------------------------------------ 8.3 CAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGG 1281 8.11 CAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGG 1289 4.2_a ------------------------------------------------------------ 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 ----------------------------------------------AACTGCCGTCGCAC 1066 8.10 ----------------------------------------------AACTGCCGTCGCAC 1064 8.3 GATTACAGGCGTGAGCCACCGCGCCCGGCCGTTTCATGTTTTCTTAAACTGCCATCGCAC 1341 8.11 GATTACAGGCGTGAGCCACCGCGCCCGGCCGTTTCATGTTTTCTTAAACTGCCATCGCAC 1349 4.2_a ----------------------------------------------AACTGCCGTCGCAC 1018 4.5 ----------------------------------------------AACTGCCGTCGCAC 1039 4.3 ----------------------------------------------AACTGCCGTCGCAC 1041 4.2_b ----------------------------------------------AACTGCCGTCGCAC 1043 4.4 ----------------------------------------------AACTGCCGTCGCAC 1042 4.1_b ----------------------------------------------AACTGCCGTCGGAC 1042 8.1 ----------------------------------------------AACTGCCGCCGCAC 1041 8.7 ----------------------------------------------AACTGCCGCCGCAC 1043 8.6 ----------------------------------------------AACTGCCGCCGCAC 1046 8.8 ----------------------------------------------AACTGCCGCCGCAC 1046 8.5 ----------------------------------------------AACTGCCGCCGCAC 1046 8.2 -------------------------------------ACAAGAGTGAATGGGAAAGACAC 1085 4.1_a --------------------------------------------TAAACCTTAATCTTTT 1037                                               ** 8.9 GTCCAAAACCACTCGCTATGCAATGTCTTG-ACCATCTCTCTTTTCTGGCAAATATAAAT 1125 8.10 GTCCGAAACCATTCACTATACAATGTCATT-TTCATCTCTCTTTTCTGGCACACATAAAT 1123 8.3 ATCCGAAATCATTCACTATACAATGTCATG-ACCATCTCTCTTTCCTGGCAAACATAAAT 1400 8.11 ATCCGAAATCATTCACTATACAATGTCATG-ACCATCTCTCTTTTCTGGCAAACATAAAT 1408 4.2_a GTCCGAAACCGCTCACTATGCAGTGTCATG-ACCGTCTCTCTTTTCTGGCAAACATAAAT 1077 4.5 GTCCGAAACCGCTCACTATGCAGTCTCATG-ACCGTCTCTCTTTTCTGGCAAACATAAAT 1098 4.3 GTCCGAAACCGCTCACTATGCAGTGTCATG-ACCGTCTCTCTTTTCTGGCAAACATAAAT 1100 4.2_b GTCCGAAACCGCTCACTATGCAGTGTCATG-ACCGTCTCTCTTTTCTGGCAAACATAAAT 1102 4.4 GTCCGAAACCGCTCACTATGCAGTGTCATG-ACCGTCTCTCTTTTCTGGCAAACATAAAT 1101 4.1_b GTCAGAAACTACTCACTATACAATGTCGTG-ACAATCTACATTTTCGGGCAAACACAAAT 1101 8.1 GTCCGAAACCACTCACTATACAATGTCAGG-ACCATCTCTCTTTTCTGGCACACATAAAT 1100 8.7 GTCCGAAACCACTCACTATACAATGTCAGG-ACCATCTCTCTTTTCTGGCACACATAAAT 1102 8.6 GTCCGAAACCACTCACTATACAATGTCAGG-ACCATCTCTCTTTTCTGGTACACATAAAT 1105 8.8 GTCCGAAACCACTCACTATACAATGTCAGG-ACCATCTCTCTTTTCTGGTACACATAAAT 1105 8.5 GTCCGAAACCACTCACTATACAATGTCAGG-ACCATCTCTCTTTTCTGGCACACATAAAT 1105 8.2 AGTGAGAGTGTGTCAAGAGGCAGGGA-ACC-AAGAGCCCTCGGCGCTGA-AGACACAGAC 1142 4.1_a GCCAAAATATTTGTAGCTTATGTTCCCATTTAACAAGGTTTTCTGGTCAAAACTGTGCAC 1097       *                                           *       * 8.9 TTTCGGAATGTCATCAATTAGTCTCTCGGTGATTGCATTATTTCCCCAAAGTCTTTTACA 1185 8.10 TTGCGGAATGTCATCAATTAGTCTCTCGGTGATTGCATGATTTCCCCAAAGTCTTACACA 1183 8.3 TTGGGGATTGTCATCAATTAGTCTCTCAGTGACTGCATGATTTCCACAAAGTCTTTCACA 1460 8.11 TTGGGGATTGTCATCAATTAGTCTCTCGGTGACTGAATGATTTCCACAAAGTCTTTCACA 1468 4.2_a TTGGGGATTGTCATCAATTAGTCTCTCGGGGATTGCATGATTTCCCCAAAGGCTTTCACA 1137 4.5 TTGGGGATTGTCATCAATTAGTCTCTCGGGGATTGCATGATTTCCCCAAAGGCTTTCACA 1158 4.3 TTGGGGATTCTCATCAATTAGTCTCTCGGGGATTGCATGATTTCCCCAAAGGCTTTCACA 1160 4.2_b TTGGGGATTGTCATCAATCAGTCTCTCGGGGATTGCATGATTTCCCCAAAGGCTTTCACA 1162 4.4 TTGGGGATTGTCATCAATTAGTCTCTCGGGGATTGCATGATTTCCCCAAAGGCTTTCACT 1161 4.1_b TTGGGGAATGTCATCAAATAGTCTCCCGCTGATTGCATGATT-CCACAAAGTCCTACACA 1160 8.1 TTGGGGAATGTCATCAATTAGTCTCTCGGTGATTGCATGATTTCCCCAAAGTCTTTCACA 1160 8.7 TTGGGGAATGTCATCAATTAGTCTCTCGGTGATTGCATGATTTCCCCAAAGTCTTTCACA 1162 8.6 TTGGGGAAAGTCATCAATTAGTCTCTCGGTGATTGCATGATTTCCCCAAAGTCTTTCACA 1165 8.8 TTGGGGAAAGTCATCAATTAGTCTCTCGGTGATTGCATGATTTCCCCAAAGTCTTTCACA 1165 8.5 TTGGGGAATGTCATCAATTAGTCTCTCGGTGATTGCATGATTTCCCCAAAGTCTTTCACA 1165 8.2 A-GGCGAGCAACG-CAAGGAGAGCTCAAGAGAGACTACCCCTGCCTCCAGG--TACCCGA 1198 4.1_a CCACATCATTCTAATGAACTTAGTGTCCAATAAAACATGGACTCTCAGTCGTCCCACGGA 1157                 *              *    *      *      * 8.9 GTCTAGTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGCATGTTTCTACGACTTAATGC 1245 8.10 CTCTACATTGTGCACTGAGTATCTCTTCAGACTTTAGTGCATGTTTCTACCACTTGATGC 1243 8.3 GTCTACTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGT--GTTTCTACCATATGATGC 1518 8.11 GTCTACTTTATGCACTGAGTATCTCTTCAAACTTCAGTGTATGTTTCTACCATTTGATGC 1528 4.2_a GTCTACTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGCATGTTTCTACCATTTGATTC 1197 4.5 GTCTACTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGCATGTTTCTACCATTTCATGC 1218 4.3 GTCTACTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGCATGTTTCTACCATTTGATTC 1220 4.2_b GTCTACTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGCATGTTTCTACCATTTGATGC 1222 4.4 GTCTACTTTGTGCACTGAGTATCTCTTCAAACTTCAGTGCATGTTTCTACCATTTGATGC 1221 4.1_b GTCTACATTGTGCACTGAGTATCTCTTCAAACTTCAGTGCTTCTTTCTACCATATGATGC 1220 8.1 GTCTACTTTGTGCAATGAGTATCTCTTCAAACTTCAGTGCATATTTCTACCATTTGATGC 1220 8.7 GCCTACTTTGTGCACTGAGTATCTCTTCAAACTTTAGTGCATGTTTCTACCATTTGATGC 1222 8.6 GTCTACTTTGTGCACTGAGTAACTCTCCAAACTTCAGTGCATGTTTCIACCATTTGATGC 1225 8.8 GTCTACTTTGTGCACTGAGTAACTCTCCAAACTTCAGTGCATGTTTCTACCATTTGATGC 1225 8.5 GCCTACTTTGTGCACTGAGTATCTCTTCAAACTTTAGTGCATGTTTCTACCATTTGATGC 1225 8.2 GTTGGACGAGCACTTGGTGGAAAGAGCCACTCAGGAAAGCAC-CTTAGACCACTGGAAAT 1257 4.1_a AGTTATTTTGTGTGCATAGTACATCTCTGTGAATATGCCTAATGAGGTATGGAAGGACAC 1217                   * *                           *       * 8.9 TTTATTATTCAGCAATCTAGCTTCCACAAGAGCATTTAATGTAAAGACTTGTCT-TTTTC 1304 8.10 TTTATTACTT-GCCATCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTCTCT-TGTTC 1301 8.3 TTTATTATTTGGCAACCTAGCTTCCAAAAGAGCATTTCATGCAAAGACTTGTCT-TGTTA 1577 8.11 TTTATTATTTGGCAACCTAGCTTCCAAAAGAGCATTTCATGCAAAGACTTGTCT-TGTTA 1587 4.2_a TTTCTTATTTGGCAATCTAGCTTCCACAAGAGCATTTCACGCAAAGACTTGTCT-TGTTC 1256 4.5 TTTCTTATTTGGCAATCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTGTCT-TGTTC 1277 4.3 TTTCTTATTTGGCAATCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTGTCT-TGTTC 1279 4.2_b TTTATTATTTGGCAATCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTGTCT-TGTTC 1281 4.4 TTTATTATTTGGCAATCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTGTCT-TCTTC 1280 4.1_b TTTATCATTTGGCAATCTAGCTTCCACAAGAGCATTTCATGCAAACACTTGTCT-TGTTG 1279 8.1 TTTATTATTTGGCAACCTAGCTTCCACAAGAGCATGTCAGGCAAAGAGTTCTCT-TGTTC 1279 8.7 TTTATTATTTGGCAGCCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTGTCT-TGTTC 1281 8.6 TTTATT---TGGCAGCCTAGCTTCCACAAGAGTATTTCATGCAAAGACTTGTCT-TGTTC 1281 8.8 TTTATT---TGGCAGCCTAGCTTCCACAAGAGTATTTCATGCAAAGACTTGTCT-TGTTC 1281 8.5 TTTATTATTTGGCAGCCTAGCTTCCACAAGAGCATTTCATGCAAAGACTTGTCT-TGTTC 1284 8.2 TCCTCCAAGAGCAAAACAAAACGAAGCCTGAGTTCAACGTCAGAAAACTTGAAGGTACCC 1317 4.1_a TT-ATTATCCAAACAGAGACATTCCACTGGTGCTAGAGAGCCACAGAC--GGAAGTTTTC 1274 *                 *          * *            * *        * 8.9 TCCACTGGCAGGTAATTTCACTCGGATATAGAATCATTAGGCTGAACATGGAAAGGTTAT 1364 8.10 TCCACTGGCAGGTAATTTCACTCGGATAGAGAATCAATAGGCTGAACGTGGAAAGGTTAT 1361 8.3 TCCACTGGCAGCTAATTTCATTCGGATAGAGAATCAATAGGCTGAACGTGGAAAGCTTAT 1637 8.11 TCCACTGGCAGCTAATTTCATTCGGATAGAGAATCAATAGGCTGAACGTGGAAAGCTTAT 1647 4.2_a TCCACTGGCAGGTAATTTCACTCGGACAGAGAATCAATAGGCTCAACGTGGAAAGCTTAT 1316 4.5 TCCACTGGCAGGTAATTTCACTCAGATAGAGAATCAATAGGCTCAACGTGGAAAGCTTAT 1337 4.3 TCCCCTGGCAGGTAATTTCACTCGGACAGAGAATCAATAGGCTCAACGTGGAAAGGTTAT 1339 4.2_b TCCACTGGCAGGTAATTTCACTCGGACAGAGAATCAATAGGCTCAACGTGGAAAGGTTAT 1341 4.4 TCCACTGGCAGGTAATTTCACTCGGACAGAGAATCAATAGGCTCAACGTGGAAAGGTTAT 1340 4.1_b TCCACTGGCAAGTAATTCAACACGGATAGAGAATCAATAGGCTCAACGTGGAAAGGTTAT 1339 8.1 TCCACTGGAAGGTAATTTCATTCGCACAGAGAATCAATAGGCTGAACGTAGAAAGGTTAT 1339 8.7 TCCACTGGCCAGTAATTTCACTCGGATAGAGAGTCAATAGGCTGAACGTGGAAAGGTTAT 1341 8.6 TCCACTGGCAGGTAATTTCACTCGGATAGAGAATCAATAGTCTGAACGTGGAAAGGTTAT 1341 8.8 TCCACTGGCAGGTAATTTCACTCGGATAGAGAATCAATAGTCTGAACGTGGAAAGGTTAT 1341 8.5 TCCACTGGCCAGTAATTTCACTCGGATAGAGAGTCAATAGGCTGAACGTGGAAAGGTTAT 1344 8.2 TGCCTCCCAACGTACTTGTGATTCATCAATCAAAATACAAGTGTGGGATGAAAAA-CCAT 1376 4.1_a TCTGCCTACTGGAAATAAAGC-----CAAGCTTTCTTCTTTCCTCAGCCGTGAGGATTGC 1329 *            * *           *                        * 8.9 CGCTGGGAGGTCTGTTTGATTCCACGGATCTCTCCTTTTTTATTGAGGAAAAAAATATGC 1424 8.10 CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTTATTAAGGAAAAAGATACAC 1421 8.3 CGCTGGAAGGTTTGTTTGTTTCCACGGATCTCTCCTTTCTTATTAGGGAAAAAAATACGC 1697 8.11 CGCTGGAAGGTTTGTTTGTTTCCACGGATCTCTCCTTTCTTATTAGGGAAAAAAATACGC 1707 4.2_a CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTCATTAGGGAAGAAAATACGC 1376 4.5 CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTCATTAGGGAAGAAAATACGC 1397 4.3 CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTCACTAGGGAAGAAAATACGC 1399 4.2_b CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTCACTAGGGAAGAAAATACGC 1401 4.4 CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTCACTAGGGAAGAAAATACGC 1400 4.1_b CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTCTCATTAGGGAAGAAAATACGC 1399 8.1 CGCTGGAAGCTCTGTTTCATTCCACGGATCTCTCCTTTCTTATTAAAGAAAAAAATACGC 1399 8.7 CCCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTATTATTAAGGAAGAAAATACGC 1401 8.6 CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTATTATTAAGGAAAAATATACGC 1401 8.8 CGCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTATTATTAAGGAAAAATATACGC 1401 8.5 CCCTGGAAGGTCTGTTTGATTCCACGGATCTCTCCTTTATTATTAAGGAAGAAAATACGC 1404 8.2 CATCCTGAA--CAGCAAAGCTCCCTGCTAAACCTCTCTTCGACGAACCCGACAGATCAGG 1434 4.1_a TGACCTCC--TCTTTATCATTCTCTCTCTCTCTTTTTTTTTAATGAGCCAAGCTCCACCA 1387                     **         *   * *   * 8.9 TGTGCTAATTACTGTACTTCATTGCCTATTCTCAGGTCAGAAAG-----CGCACTTCAGA 1479 8.10 TGCGCTAATTACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTCCGA 1476 8.3 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTCCGA 1752 8.11 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTCCGA 1762 4.2_a TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTTCGT 1431 4.5 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTTCGA 1452 4.3 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTTCGA 1454 4.2_b TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTTCGA 1456 4.4 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTTCGA 1455 4.1_b TGTGCTAAATATTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CACACTTCCGA 1454 8.1 TGTGCTAAATACCATACTTCATTGACTAATCTCAGGTCAGAAAG-----CACACTTCCGA 1454 8.7 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTCAGA 1456 8.6 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----TGCACTTCAGA 1456 8.8 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----TGCACTTCAGA 1456 8.5 TGTGCTAAATACTATACTTCATTGACTATTCTCAGGTCAGAAAG-----CGCACTTCAGA 1459 8.2 AGT-CCATGAACACTGGCACACTCGCTTCTCT---GCAAGGGAG-----GAC-CAGGAGA 1484 4.1_a AATAATAAGATAAACTTTGTGCAAGACTTGGTAAGAGTAGAGTGTCTGACACCTTATGGT 1447       *                        *      **   *       *      * 8.9 CTTCT---CCTTCTATCGCTGAAAGGAT-GATGGTATCTGCCAAAAGCACATAC-TCGGA 1534 8.10 CTTCTTGTCCTTCCATCGCTGAGAGGAT-GATGGTATCTGCCAAAAGCACATAT-TTGGA 1534 8.3 CTTCTTCTCTTTCCGTCGCTGAGAGGAT-GATGGTAGCTGCCAAAAGCACATAC-TTGGA 1810 8.11 CTTCTTCTCTTTCCGTCGCTGAGAGGAT-GATGGTAGCTGCCAAAAGCACATAC-TTGGA 1820 4.2_a CTTCTTGTCCTTCCGTCGCGGAGAGGAT-GATGGCAGCTGCCAAAAGTACATAC-TTGGA 1489 4.5 CTTCTTGTCTTTCCGTCGCTGAGAGGAT-GATGGCAGTTGCCAAAAGTACATAC-TTGGA 1510 4.3 CTTCTTGTCCTTCCGTCGCTGAGAGGAT-GATGGCAGCTGCCAAAAGTACCTAC-TTGGA 1512 4.2_b CTTCTTGTCCTTCCGTCGCTGAGAGGAT-GATGGCAGCTGCCAAAAGTACCTAC-TTGGA 1514 4.4 CTTCTTGTCCTTCCGTCGCTGAGAGGAT-GATGGCAGCTGCCAAAAGTAACTAC-TTGGA 1513 4.1_b ATTCTTGTCCTTCGGTCACTGAGAGGAT-GATGGTAGCTGCCAAAAGTACATAC-TTGGA 1512 8.1 TTTCTTGTCCTTCTGTCGCTGAGAGGAT-GATGATAGCTGCCAAAAGTACATAC-TTGGA 1512 8.7 CTTCTTGTCCTTCCGTTGATGAGAGGAT-GACGGTAGCTGCCAAAAGTACATAC-TTGGA 1514 8.6 CTTCTTGTGCTTCCATCGCTGAGAGGAT-GATGGTAGCTGCCAAAAGTACATAC-TTGGA 1514 8.8 CTTCTTGTGCTTCCATCGCTGAGAGGAT-GATGGTAGCTGCCAAAAGTACATAC-TTGGA 1514 8.5 CTTCTTGTCCTTCCGTTGATGAGAGGAT-GACGGTAGCTGCCAAAAGTACATAC-TTGGA 1517 8.2 --------------GCCAAAGGGAAGA---ACAAACACTGCAAGAGGGCTCTGC-TTGTG 1526 4.1_a GCTATAATACTCAAAGCAAAAGCAAAATCGCCTAGGACCAGAAAAGGGAGTCACATAGGA 1507                        *  *               * * *        * * 8.8 AGT---ACATCCCAGCACAAACACACACACACACA---------------CACGCACACA 1576 8.10 AGT---ACATCCCGGCACAAACACACACACACACA---------------CACACACACA 1576 8.3 GGT---TCATCCCAGCACAAACACACACACACAAA---------------CACACAAACA 1852 8.11 GGT---TCATCCCAGCACAAACACACACACACAAA---------------CACACAAACA 1862 4.2_a AGT---TCATCCCAGCACAAACACACACACACACGC--CCCCCCCACACACACACACACA 1544 4.5 AGT---TCATCCCAGCACAAACACACACACACACGCGCCCCCCCCACACACACACACACG 1567 4.3 GGT---TCATCCCAGCACAAACACACACACACACACGCCCCCCCC---CACACACACACA 1566 4.2_b GGT---TCATCCCAGCACAAACACACACACACACACGCCCCCCCC-----CACACACACA 1566 4.4 GGT---TCATCCCAGCACAAACACACACACACACATGCCCCCCCC----ACACACACACA 1566 4.1_b AGT---TCATCCCAGCACAAACACACATACACACACGCCCCCCCC-----CACACACACA 1564 8.1 AGT---TCATCCCAGCACGAGCACACACACACATAAACACACACA-----CACACACACA 1564 8.7 AGT---TCATCCCAGCACAAGCACACACACACACA--CACAAACA-----CACACACACA 1564 8.6 AGT---TCATCCCAGCACAAGCACACACACACACA--CACAAACA-----CACACACACA 1564 8.8 AGT---TCATCCCAGCACAAGCACACACACACACA--CACAAACA-----CACACACACA 1564 8.5 AGT---TCATCCCAGCACAAGCACACACACACACA--CACAAACA-----CACACACACA 1567 8.2 TGCCAGTGATCTCAGTGGAAGTGCCGACCCACACGTAGGGGAGAA------AAACACACA 1580 4.1_a AATCTAGAAGACCTATTGGCTGAGAGACCTGCAGCCTCATAGTTCATTAGCTCTC-CATA 1566         *   *             *    **                     *  * 8.9 AACACACATACTCACAC------------GGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1622 8.10 CACACACACACACACAC------------GGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1622 8.3 CACACACA------CAC------------GGCTTCA--TAGGTAAAGATTTCTTCCCTGA 1892 8.11 CACACACA------CAC------------GGCTTCA--TAGGTAAAGATTTCTTCCCTGA 1902 4.2_a AACACACTCACACACACACACGCACAC--GGTTTCC--TAGGTAAAGATTTCTTCCCTGC 1600 4.5 AACACAATCACACACACACACTCACAC--GGTTTCC--TACGTAAAGATTTCTTCCCTGC 1623 4.3 AACACACTCACACACACACACCCACAC--GGTTTCC--TAGGTAAAGATTTCTTCCCTGC 1622 4.2_b AACACACTCACACACACACACGCACAC--GGTTTCC--TAGGTAAAGATTTCTTCCCTGC 1622 4.4 AACACACTCACACACACACACGCACAC--GGTTTCC--TAGGTAAAGATTTCTTCCCTGC 1622 4.1_b AACACACTCACACACACACACACACACACGGTTTCC--AAGGTAAAGATTTCTTCCCTGC 1622 8.1 CACACACACACACACACAGACACACACAGGGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1622 8.7 CACACACACACAGAGAGAGATACACACACGGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1622 8.6 CACACACACACACACACAGACACACACACGGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1622 8.8 CACACACACACACACACAGACACACACACGGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1622 8.S CACACACACACAGAGAGAGATACACACACGGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1625 8.2 CACACACACACACACAC------------GGTTTCA--TAGGTAAAGATTTCTTCCCTGA 1626 4.1_a GCAACTCTCACATGAAATGAAGTCAGTGGTGTTTCAAGTGCTTGAAACCCTCTTTACT-C 1625    **          *              * ***       * **    ****  ** 8.9 CATTCTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACCAT 1679 8.10 CATTGTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1679 8.3 CATTGTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCTGGTTACACT 1949 8.11 CATTGTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCTGGTTACACT 1959 4.2_a CATTGCTTTACCTAAAATAAG---GCAAGTGTGAGGCCACTGTCCCAACCCGGTTACACT 1657 4.5 CATTGCTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1680 4.3 CATTGCTTTACCTAAAATAAG---GCAACTGTGAGGCCACTGTCCCAACCCGGTTACACT 1679 4.2_b CATTGCTTTACCTAAAATAAG---GCAACTGTGAGTCCACTGTCCCAACCCGGTTACACT 1679 4.4 CATTGCTTTACCTAAAATAAG---GCAACTGTGAGGCCACTGTCCCAACCCGGTTACACT 1679 4.1_b CATTGCTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1679 8.1 CATTCTTTTACCTAAAATAAG---GCAACTGTGCGGCCACTGCCCAAACCCGGTTACACT 1679 8.7 CATTCTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1679 8.6 CATTCTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1679 8.8 CATTCTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1679 8.5 CATT-CTGTACCTAAAATAAG---GCAACTGTGTG-CCACTGTCCCAACCCG-TTACACT 1679 8.2 CATTGTTTTACCTAAAATAAG---GCAACTGTGTGGCCACTGTCCCAACCCGGTTACACT 1683 4.1_a TACTTCTAAATGTGAATTAATTATGCAAATTTACTAGCAGTTGCTAGACCT--CAAAAGC 1683  * *  *  *  * ** ***    **** * *     ** *  *   ***     * 8.9 CATATTATATGTGCCTATCATCCTGAGGAGTAATTT----GATGAAGGTGTTTTAGAAGT 1735 8.10 CATATTACATGTGTCTATCAGCCTGAGGAGTAGTTT----GATTCAGGTGTTCTAGAAGT 1735 8.3 CATATTACATCTGCCTATCATCCTGAGGAGTAATGT----GATTCAGGTGTTCTAGAAGT 2005 8.11 CATATTACATCTGCCTATCATCCTGAGGAGTAATGT----GATTCAGGTGTTCTAGAAGT 2015 4.2_a CCTATTATATGTGCCTATCATCCTGAGGAGTAATTT----GATTCAGGTGTTCTGGAAGT 1713 4.5 CCTATTATATGTGCCTATCATCCTGAGGAGTAATTT----GATTCAGGTGTTCTGGAAGT 1736 4.3 CCTATTATATGTGCCTATCATCCTGAGGAGTAATTT----GATTCAGGTGTTCTGGAAGT 1735 4.2_b CCTATTATATGTGCCTATCATCCTGAGGAGTAATTT----GATTCAGGTGTTCTGGAAGT 1735 4.4 CCTATTATATGTGCCTATCATCCTGAGGAGTAATTT----GATTCAGGTGTTCTGGAAGT 1735 4.1_b CCTATTATATGTGCTTATCATCCTGAGGAGTAATCT----GATTCAGGTGTTCTGGAAGT 1735 8.1 CATATTATATGTGCCTATCACCCTGAGGAGTAATTT----GATTCAGGTGTTCTAGAAGT 1735 8.7 CATATTATATGTGCCTATCACCCTGAGGAGTAATTT----GATTCAGGTGTTCTAGAAGT 1735 8.6 CATATTACATGTGTCTATCAGCCTGAGGAGTAATTT----GATTCAGGTGTTCTAGAAGT 1735 8.8 CATATTACATGTGTCTATCAGCCTGAGGAGTAATTT----GATTCAGGTGTTCTAGAAGT 1735 8.5 CATATTATATGTGCCTATCACCCTGAGGAGTAATTT----GATTCAGGTGTTCTAGAAGT 1735 8.2 CATATTACATGTGTCTATCAGCCTGAGGAGTAGTTT----GATTCAGGTGTTCTAGAAGT 1739 4.1_a AAAATAATCAGGCATTATTCTACTAAGTATTGGTCTCCATAACTCCTCTATTTTCTTTAG 1743    ** *        ***    ** ** * *  * *     *      * ** * 8.9 CATGATGTGGACTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.10 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.3 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 2065 8.11 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 2075 4.2_a CATGCTGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCCAGGGGACACACCCTGTGACTC 1773 4.5 CATGCTGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1796 4.3 CATGCTGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCCAGGGGACACACCCTGTGACTC 1795 4.2_b CATGCTGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCCAGGGGACACACCCTGTGACTC 1795 4.4 CATGCTGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCCAGGGGACACACCCTGTGACTC 1795 4.1_b CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.1 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.7 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.6 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.8 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.5 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1795 8.2 CATGATGTGGGCTGTGTCTGTTGAATTCCCAGCGATGCAAGGGGACACACCCTGTGACTC 1799 4.1_a GAAAAGTTAGTCTAAGACATTTGGCATAAAGGCTATGCCAAAGCTTTGGTGGGGTCAGCC 1803  *     * * **  * *  ***   *    ** **** *  *          ** *  * 8.9 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATTGCCCACCTTATGTGCGGGTGGGG 1855 8.10 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATCGCGCACCTGATGGGTGGGTGGGG 1855 8.3 ATTCCTTAATTAAATGCTGACATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGAGG 2125 8.11 ATTCCTTAATTAAATGCTGATATTTGATTGGTTTATCGCGCACCTGATGAGTGGGTGAGG 2135 4.2_a CTTCCTGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTAGGTGGGG 1833 4.5 CTTCCTGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGGGG 1856 4.3 CTTCCTGAATTGAGTGCTGTTATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGGGG 1855 4.2_b CTTCCTGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGGGG 1855 4.4 CTTCCTGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTGGGTGGGG 1855 4.1_b CTTCCTGAATTGAGTGCTGATATTTGATTGGCTAATCGCGCACCTGATGAGTGGGTGGGG 1855 8.1 ATTCCTTAATTGAGTGCTGATATTTGATTGTTTTATCGCGCACCTGATGGGTGGGTGGGG 1855 8.7 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATCGCACACCTGATGGGTGGGTGGGG 1855 8.6 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATCGCACACCTGATGGGTGGGTGGGG 1855 8.8 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATCGCACACCTGATGGGTGGGTGGGG 1855 8.5 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATCGCACACCTGATGGGTGGGTGGGG 1855 8.2 ATTCCTTAATTGAGTGCTGATATTTGATTGGTTTATCGCGCACCTGATGGGTGGGTGGGG 1859 4.1_a AGGAAGGATTCGTGGGGGTCTCCTTGAAAATACTGCAATA-ATCTAAGAAATCTTCAACC 1862        * *     *       ****              * ** * 8.9 TGTTCGCTCTTGGTGCGGGTGAGTTATGTAAGGGCTGATTTGGCCAGAGAACTCGTTATT 1915 8.10 TGTTCGCGGTTGGTGGGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 8.3 TGTTCGCCGTTGGTGGGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 2185 8.11 TGTTCGCCGTTGGTGCGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 2195 4.2_a TGTTCGCGGTTGGTGGGGGTGACTTACAGAAGGGCTGATGTGGCCAGAGAGCTCGTCATT 1893 4.5 TGTTCGCGGTTGGTGGGGTTGACTTACAGAAGGGCTGATGCG-CCAGAGAGCTCGTCATT 1915 4.3 TGTTCGCGGTTCGTGGGGGTGACTTATAGAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 4.2_b TGTTCGCTGTTGGTGGGGGTGACTTACAGAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 4.4 TGTTCGCGGTTCGTGGGGGTGACTTACAGAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 4.1_b TGTTCGCGGTTGGTGTGGGTGAGTTATAGAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 8.1 TGTTCGCGGTTGGTGGGGGTGAGTTCTATAAGGGATGATGCGGCCAGAGAGCTCGTCATT 1915 8.7 TGTTCGCGGTTGGTGGGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 8.6 TGTTCGCGGTTGGAGGGGGTGAGTTATATAAGGCCTGATGCGGCCAGAGAGCTGGTCATT 1915 8.8 TGTTCGCGGTTGGAGGGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCTGGTCATT 1915 8.5 TGTTCGCCGTTGGTGGGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCTCGTCATT 1915 8.2 TGTTCGCGGTTGGTGGGGGTGAGTTATATAAGGGCTGATGCGGCCAGAGAGCCCGTCATT 1919 4.1_a TATTGCCCCTCAGTACTGTTG-GTCCCCTGTACTTGACTTTTCCCCTTAAGTTTG--ATT 1919 * **  *  *  *    * **  *              *    **    *    *  *** 8.9 TGAAGACTCTCTCGGAAGAGATAGCGTTTTTCTGCAACCTACGGTCCCAGCAGAAAAACC 1975 8.10 TGAAGACTCTCTCGGAAGAGATAGCATCTTTCTGCAACCTGCGGTCCCAGCCGAAAAACC 1975 8.3 TGAAGACTCTCTCGGAAGAGATAGAGTCTTTCTGCAACATAAGGTCCCAGCCGAAAAACC 2245 8.11 TGAAGACTCTCTCGGAAGAGATAGCGTCTTTCTGCAACATAAGGTCCCAGCCGAAAAACC 2255 4.2_a TGAAGACTCTCTCGGAAGGGATAGCGTCTTTCTGCAACCTGTGGTCCCAGCAGACAAACC 1953 4.5 TGAAGACTCTCTCGGAAGGGATAGCGTCTTTCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 4.3 TGAAGACTCTCTCGGAAGGGATAGCGTCTTTCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 4.2_b TGAAGACTCTCTCGGAAGGGATAGCGTCTTTCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 4.4 TGAAGACTCTCTCGGAAGGGATAGCGTCTTTCTGCAACCTGCGGTCCCAGCAGACAAACC 1975 4.1_b TGAAGACTCTCTCGGAAGAGATAGCGTCTTTCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 8.1 TGAAGACTCTCTCGGAAGAGATAGCGTCTTGCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 8.7 TGAAGACTCTCTTGGAAGAGATAGCGTCTTGCTGCAACCTGCGGTCCCAGCACAAAAACC 1975 8.6 TGAAGACTCTCTCGGAAGAGATAGCGTCTTGCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 8.8 TGAAGACTCTCTCGGAAGAGATAGCGTCTTGCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 8.5 TGAAGACTCTCTTGGAAGAGATAGCGTCTTGCTGCAACCTGCGGTCCCAGCAGAAAAACC 1975 8.2 TGAAGACTC----GGAAGAGATAGCGTCTTTCTGCAACCTGCGGTCCCAGCCGAAAAACC 1975 4.1_a CCATTTCCTAATATTATCCTTCCCTCTTCCTCCTCAGCAACTAGTCTTCTAAATTAGAAC 1979   *   *        *          *    *  ** *     ***         * * * 8.9 TTGTGATCCTTGTTGCGGGCGACATG---------------------------------- 2001 8.10 CTGTGATCCTTGTTCCGGGCGACATG---------------------------------- 2001 8.3 TTGTGATCCTTGTTCCGGGCGACATG---------------------------------- 2271 8.11 TTGTGATCCTTGTTCCGGGCGACATG---------------------------------- 2281 4.2_a TTGTGATCCTTGTTCCAGTCGACATGGAGGACGACTCACTCTACTTGGGAGGTGAGTGGC 2013 4.5 TTGTGATCCTTGTTCCAGTCGACATG---------------------------------- 2001 4.3 TTGTGATCCTCGTTCCAGTCGACATG---------------------------------- 2001 4.2_b TTGTGATCCTCGTTCCAGTCGACATG---------------------------------- 2001 4.4 TTGTGATCCTTGTTCCAGTCGACATG---------------------------------- 2001 4.1_b TTGTGATCCTTGTTCCAGTCGACATG---------------------------------- 2001 8.1 TTGTGATCCTTGTTGCGGGCGACATG---------------------------------- 2001 8.7 TTGTGATCCTTGTTGCGGGCGACATG---------------------------------- 2001 8.6 TTGTGATCCTTGTTGCGGGCGACATG---------------------------------- 2001 8.8 TTGTGATCCTTGTTGCGGGCGACATG---------------------------------- 2001 8.5 TTGTGATCCTTGTTGCGGGCGACATG---------------------------------- 2001 8.2 TTGTGATCCTTGTTCCGGGCGACATG---------------------------------- 2001 4.1_a TTAAACACAATG----AGCAGATATG---------------------------------- 2001  *     *   *     *  ** *** 8.9 ------------------------------------------------------------ 8.10 ------------------------------------------------------------ 8.3 ------------------------------------------------------------ 8.11 ------------------------------------------------------------ 4.2_a AGTTCAACCACTTTTCAAAACTCACATCTTCTCGGCCAGATGCAGCTTTTGCTGAAATCC 2073 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 ------------------------------------------------------------ 8.10 ------------------------------------------------------------ 8.3 ------------------------------------------------------------ 8.11 ------------------------------------------------------------ 4.2_a AGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATGTGAGACCCGTGTCGACCTCTGAG 2133 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 ------------------------------------------------------------ 8.10 ------------------------------------------------------------ 8.3 ------------------------------------------------------------ 8.11 ------------------------------------------------------------ 4.2_a ATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAGGGAGAAGCTTCCTCTGAGTAGCA 2193 4.5 ------------------------------------------------------------ 4.3 ------------------------------------------------------------ 4.2_b ------------------------------------------------------------ 4.4 ------------------------------------------------------------ 4.1_b ------------------------------------------------------------ 8.1 ------------------------------------------------------------ 8.7 ------------------------------------------------------------ 8.6 ------------------------------------------------------------ 8.8 ------------------------------------------------------------ 8.5 ------------------------------------------------------------ 8.2 ------------------------------------------------------------ 4.1_a ------------------------------------------------------------ 8.9 -------------------------------------- 8.10 -------------------------------------- 8.3 -------------------------------------- 8.11 -------------------------------------- 4.2_a GGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATATG 2231 4.5 -------------------------------------- 4.3 -------------------------------------- 4.2_b -------------------------------------- 4.4 -------------------------------------- 4.1_b -------------------------------------- 8.1 -------------------------------------- 8.7 -------------------------------------- 8.6 -------------------------------------- 8.8 -------------------------------------- 8.5 -------------------------------------- 8.2 -------------------------------------- 4.1_a --------------------------------------

HDUB4.6 putative promoter sequence upstream of initiation ATG gcatgactgg cagacagctt atcgattggg ctcccctcaa aatcggttat gagcattcaa gcacaccgat gcccaggtcc cggctgcagg aataagaccc tccagggtct tgtgtgaagc ctcggcatct gcattgctca tgcttctggg gatcattctc ctgaaaatgg tggctccttt ctccctgtgg agcatctttc taagcagtgc tcttttcttc ccccaggaca ctttacatcc ggcacaggaa gccttctgat ggagcacacc tggcccatga aaagacaagg gaaagaaacg gggccaaagg tcacagtcct ctcatcccat catcctcctt aaaatcatcc taatttcatg ggccctgaag ccagggctgt ttctttacac ctagaggcct tggcgccggg cctcaattcc gccctgttcc ttaccgtcta agacatgttg ggaaaatccc tagagccagg atcttcattc ctgctaagcc agacagccgg aagacacacc caaattctgt ccctcttact tcagggaaca tgtccacttt cggcagcatt acaattttgg caccaaatgt gctaactgca attccaccat acaatgcgta actggaaatg gaggcaacat ctccgatcct gaacgatcga tgcgagaatc caggatatgc acggcttatt ttggcctttt cccactgaaa caagggccag tattaaaaat ggcacgctat cctctgtttc actccctgct tttaaacgtc tccgatgttt ctccctgaga cagggcctca cttccgtcag ccgggctttt ccacggtata attttccttg tttgcttttg tccaaattag aactttttat ttcacctcta ggaaacgttg atccattatc acatacgtat ggaaatatta tcacacatgc tgtgagatac gttgttttta ttttcatcaa ttctttaata aacaaacggt tatagctggg ataccttctg agttctcaag ttttttgttt cgtgttttct taaactgccg tcgcacgtcc gaaaccgctc actatgcagt gtcatgaccg tctctctttt ctggcaaaca taaatttggg gattgtcatc aattagtctc tcggggattg catgatttcc ccaaaggctt tcacagtcta ctttgtgcac tgagtatctc ttcaaacttc agtgcatgtt tctaccattt catgctttct tatttggcaa tctagcttcc acaagagcat ttcatgcaaa gacttgtctt gttctccact ggcaggtaat ttcactcaga tagagaatca ataggctcaa cgtggaaagg ttatcgctgg aaggtctgtt tgattccacg gatctctcct ttctcattag ggaagaaaat acgctgtgct aaatactata cttcattgac tattctcagg tcagaaagcg cactttcgac ttcttgtctt tccgtcgctg agaggatgat ggcagctgcc aaaagtacat acttggaagt tcatcgcaga aaaaacacac acacacacgc gcccccccca cacacacaca cacgaacaca atcacacaca cacacactca cacggtttcc tacgtaaaga tttcttccct gccattgctt tacctaaaat aaggcaactg tgtggccact gtcccaaccc ggttacactc ctattatatg tgcctatcat cctgaggagt aatttgattc aggtgttctg gaagtcatgc tgtgggctgt gtctgttgaa ttcccagcga tgcaagggga cacaccctgt gactccttcc tgaattgagt gctgatattt gattggctta tcgcgcacct gatgagtggg tgtggtgttc gcggttggag ggggtgactt acagaagggc tgatgcggcc agagagctcg tcatttgaag actctctcgg aagggatagc gtctttctgc aacctgcggt cccagcagaa aaaccttgtg atccttgttc cagtcgacat g HDUB4.7 putative promoter sequence upstream of initiation ATG tcctcagcgt cggtttttag gcctggcata agctgtttga aacccaggaa cgtaccccac ccatcatctt tggcctagtt aacacctccc ctccgtgtgt ggtggtttgg agaacctgct ttttcctcat cccactgatc ccaaacccag gacaccctac agctgctgac caggattaaa cctaatggag atttaatgcc attaaatcag aagaaattct gattctcagg gactgacatt cattcactta catacttgca gagtcggcca ggtgtgttgg ctcacacctg taatcccagc actttgggaa gccgaggtgg gtggatcacg aggtcaagaa ttcgagacca tcctggccaa catggtgaaa ccccgtctct actaaaaata caaaaattaa ctggtgtagc tgtgcgtgcc tgtaatccca gctactcagg aggctgaggc aggcgatttg cttgaacctg ggaggtggag gttgcagtga gccaagatta tgccattgca ctccagcctg ggcaacagag cgagactctc agaaaacaaa aaacccaaaa acttgcagag tgaatttagg aaaccatgaa gtacacagtt tgatccaatg ccttcctttt tctctttctc aaatattttg agccaggtac tatcctagac tgtcttgtga tatttacaat ctaggagaag gcaggagaga gaactaagaa cagagagcat gttctgagat gtctgctgtg tttgcaggta ccttccctca atttccctac tcactggcca tgctggaaag caggtcttgg cgctatattt ataccatggt acttcccctc cctatactca attggttggc cagaagccca attgtcactc tctctctctg tctccctctc gctccctccc tccctccctc cctccctccc tctccaagat atccagtaac tgactgatca gctgggggtg ggctctgctg gctgccaaga tgggccacca gcaaaaaggg aaaattggtt gtgagtgaga agaagagata agaaattcca cagggctgat aagaaagacc atgggcttcc aggcgcggtg tttcacgcct gtaatcccag cacttgggag gccaggatgg tcggatttgg caatctagct tccacaagag catttcacgc aaagacttgt cttgttctcc actggcaggt aatttcactc ggatagagaa tcaataggct caacgtggaa aggttatcgc tggaaggtct gtttaattcc acggatctct cctttctcat tagggaagaa aatacgctgt gctaaatact atacttcatt gactattctc aggtcagaaa gcgcactttc gacttcttgt ccttccgtcg ctgagaggat gatggcagct gccaaaagta catacttgga agttcatccc agcacaaaca cacacacaca cacgcccccc cacacacaca cacacaaaca cactcacaca cacacacgca cacggtttcc taggtaaaga tttcttccct gccattgctt tacctaaaat aaggcaactg tgaggccact gtcccaaccc ggttacgctc ctattatatg tgcctatcat cctgaggagt aatttgattc aggtgttctg gaagtcatgt tgtgggctgt gtctgttgaa ttcccagcga tgccagggga cacaccctgt gactccttcc tgaattgagt gctgatattt gattggctta tcgcgcacct gatgagtggg tggggtgttc gcggttggtg ggggtgactt acagaagggc tgatgcggcc agagagctcg tcatttgaag actctctcgg aagggatagc gtccttctgc aacctgcggt cccagcagac aaaccttgtg atccttgttc cagtcgacat g HDUB4.8 putative promoter sequence upstream of initiation ATG CAGGGCTCCG TAGAACCACA GAATCTTGGG CGCAACCCTG CTCAAGCACC CAAATGTGCA TACGAACAGG GTCTCCGTGT GACGTGTGTG AAAACTACAG TGTGATGAGC ATGACTGGCA GACAGCTTAT CGATTGGGCT CCCCTCAAAA TCGGTTATGA GCATTCAAGC ACACCGATGC CCAGGTCCCG GCTGCAGGAA TAAGACCCTC CAGGGTCTTG TGTGAAGCCT CGGCATCTGC ATTGCTCATG CTTCTGGGGA TCATTCTCCT GAAAATGGTG GCTCCTTTCT CCCTGTGGAG CATCTTTCTA AGCAGTGCTC TTTTCTTCCC CCAGGACACT TTACATCCGG CACAGGAAGC CTTCTGATGG AGCACACCTG GCCCATGAAA AGACAAGGGA AAGAAACGGG GCCAAAGGTC ACAGTCCTCT CATCCCATCA TCCTCCTTAA AATCATCCTA ATTTCATGGG CCCTGAAGCC AGGGCTGTTT CTTTACACCT AGAGGCCTTG GCGCCGGGCC TCAATTCCGC CCTGTTCCTT ACCGTCTAAG ACATGTTGGG AAAATCCCTA GAGCCAGGAT CTTCATTCCT GCTAAGCCAG ACAGCCGGAA GACACACCCA AATTCTGTCC CTCTTACTTC AGGGAACATG TCCACTTTCG GCAGCATTAC AATTTTGGCA CCAAATGTGC TAACTGCAAT TCCACCATAC AATGCGTAAC TGGAAATGGA GGCAACATCT CCGATCCTGA ACGATCGATG CGAGAATCCA GGATATGCAC GGCTTATTTT GGCCTTTTCC CACTGAAACA AGGGCCAGTA TTAAAAATGG CACGCTATCC TCTGTTTCAC TCCCTGCTTT TAAACGTCTC CGATGTTTCT CCCTGAGACA GGGCCTCACT TCCGTCAGCC GGGCTTTTCT ACGGTATAAT TTTCCTTGTT TGCTTTTGTC CAAATTAGAA CTTTTTATTT CACCTCTAGG AAACGTTGAT CCATTATCAC ATACGTATGG AAATATTATC ACACATGCTG TGAGATACGT TGTTTTTATT TTCATCAATT CTTTAATAAA CAAACGGTTA TAGCTGGGAT ACCTTCTGAG TTCTCAAGTT TTTTGTTTCG TGTTTTCTTA AACTGCCGTC GCACGTCCGA AACCGCTCAC TATGCAGTGT CATGACCGTC TCTCTTTTCT GGCAAACATA AATTTGGGGA TTGTCATCAA TTAGTCTCTC GGGGATTGCA TGATTTCCCC AAAGGCTTTC ACAGTCTACT TTGTGCACTG AGTATCTCTT CAAACTTCAG TGCATGTTTC TACCATTTGA TGCTTTATTA TTTGGCAATC TAGCTTCCAC AAGAGCATTT CATGCAAAGA CTTGTCTTCT TCTCCACTGG CAGGTAATTT CACTTGGACA GAGAATCAAT AGGCTCAACG TGGAAAGGTT ATCGCTGGAA GGTCTGTTTG ATTCCACGGA TCTCTCCTTT CTCATTAGGG AAGAAAATAC GCTGTGCTAA ATACTATACT TCATTGACTA TTCTCAGGTC AGAAAGCGCA CTTTCGACTT CTTGTCCTTC CGTCGCTGAG AGGATGATGG CAGCTGCCAA AAGTACATAC TTGGAGGTTC ATCCCAGCAC AAACACACAC ACACACGCGC CCCCCCCACA CACACACACA CGAACACAAT CACACACACA CACTCACACG GTTTCCTACG TAAAGATTTC TTCCCTGCCA TTGCTTTACC TAAAATAAGG CAACTGTGTG GCCACTGTCC CAACCCGGTT ACACTCCTAT TATATGTGCC TATCATCCTG AGGAGTAATT TGATTCAGGT GTTCTGGAAG TCATGCTGTG GGCTGTGTCT GTTGAATACC CAGCGATGCA AGGGGACACA CCCTGTGACT CCTTCCTGAA TTGAGTGCTG ATATTTGATT GGCTTATCGC GCACCTGATG AGTGGGTGGG GTGTTCGCGG TTGGTGGGGG TGACTTACAG AAGGGCTGAT G HDUB4.9 putative promoter sequence upstream of initiation ATG gcatctttct agtcagcgct cttttcttcg cccaggacac tttacatccg gcacacgaag ccttctgatg gagcacacct ggcccatgaa aagccaaggg aaagaaacgg ggccaaaggt cacagtcctc tcctcccatc atcctcctta aaatcatcct aatttcctgg ccctgaagcc agggctgttt ctttacacct agaggccttg gcgccgggcc tcaattccgc cctgttcctt accgtctaag acatgttggg aaaatcccta gagccaggat cttcattcct gctaagccag acagccggaa gacacaccca aattctgtcc ctcttacttc agggaacatg tccactttcg gcagcattac aattttggca ccaaatgtgc taactgcaat tccaccatac aatgcctaac tggaaatgga ggcaacatct ccgatcctga acgatcgatg cgagaatcca ggatatgcac ggcttatttt ggccttttcc cactgaaaca agggccagta ttaaaaatgg cacgctatcc tctgtttcac tccctgcttt taaacgtctc cgatgttgct ccctgagaca ggacctcact tccgtcagcc gggcttttct acggtataat tttccttgtt tgcttttgtc caaattagaa ctttttattt catctctagg aaacgttgat ccattatcac atacgtatgg aaatattatc acacatgctg tgagatacgt tgtttttatt ttcatcaatt ctttaataaa caaaaggtta tagctgggat accttctgag ttctcaagtt ttttgtttcg tgttttctta aactgccgtc gcacgtccga aaccgctcac tatgcagtgt catgaccgtc tctcttttct ggcaaacata aatttgggga ttgtcatcaa ttagtctctc ggggattgca tgatttcccc aaaggctttc acagtctact ttgtgcactg agtatctctt caaacttcag tgcatgtttc tacaatttga tgctttatta tttggcaatc tagcttccac aagagcattt catgcaaaga cttgtcttgt tctccactgg caggtacttt cactcggaca gagaatcaat aggctcaacg tggaaaggtt ttcgctggaa ggtctgtttg attccacgga tctctccttt ctcattaggg aagaaaatac actgtgctaa atactatact tcattgacta ttctcaggtc agaaagcgca ctttcgactt cttgtccttc cgtcgctgag aggatgatgg cagctgccaa aagtacatac ttggaagttc atcccagcac aaacacacac acacgcgccc ccccacacac acacacaaac acaatcacac acacacacaa tcacacggtt tcctaggtaa agatttcttc cctgccatgg ctttacctaa aataaggcaa ctgtgtgacc actgtcccaa cccggttaca ctcctattat atgtgcctat catcctgagg agtaatttga ttcaggtgtt ctggaagtca tgctgtggga tgtgtctgtt gaattcccag cgatgccagg gggacacacc ctgtgactcc ttcctgaatt gagtgctgat atttgattgg cttatcgcgc acctgatgag tgggtggggt gttcgcggtt ggtgggggtg acttacagaa gggctgatgc ggccagagag ctcgtcattt gaagactctc tcggaaggga tagcgtcttt ctgcaacctg cggtcccagc agaaaaacct tgtgatcctt gttccagtcg acatg HDUB4.10 putative promoter sequence upstream of initiation ATG agcaagcttt ggaacagttg gtgaagcccg aagaactcaa tggagagaat gcctatcatt gtggtgtttg tctccagagg gcgccggcct ccaagacgtt aactttacac acctctgcca aggtcctcat ccttgtattg aagagattct ccgatgtcac aggcaacaag attgccaaga atgtgcaata tcctgagtgc cttgacatgc agccatacat gtctcagcag aacacaggac ctcttgtcta tgtcctctat gctgtgctgg tccacgctga gtggagttgt cacaacggac attacttctc ttatgtcaaa gctcaagaag gccagtggta taaaatggat gatgccgagg tcaccgccgc tagcatcact tctgtcctga gtcaacaggc ctacgtcctc ttttacatcc agaagagtga atgggaaaga catagtgaga gtgtgtcaag aggcagggaa ccaagagccc ttggcgcaga agacacagac aggcgagcaa cgcaaggaga gctcaagaga gaccacccct gcctccaggc ccccgagttg gacgagcact tggtggaaag agccactcag gaaagcacct tagaccactg gaaattcctt caagagcaaa acaaaacgaa gcctgagttc aacgtcagaa aagtcaaagg taccctgcct cccgacgtac ttgtgattca tcaatcaaaa tacaagtgtg ggatgaagaa ccatcatcct gaacagcaaa gctccctgct aaacctctct tcgtcgaccc cgacacatca ggagtccatg aacactggca cactcgcttc cctgcgaggg agggccagga gatccaaagg gaagaacaaa cacagcaaga gggctctgct tgtgtgccag tgatctcagt ggaagtaccg acccacacgt aggggtgcac acacacacgc acacacacag acacacacat aactacaccc agaagcgcgc acgcaaacac acacacaccc acacaaacac gaacaccgtc aatcctacat aaactaatga ggagcccaag tttctgtctc tacaacaggg acaactggat agtgatggct acatctcagg atgagcccgc atatgggaaa catcaagttt tggggtcgtg agtcttccga acctctggag ggactgtctg agtgtttgtg ttcatgatag gtgacattca gtgtgtattt ctgaatatga cctaccgacg tgtaggtttg cgtgtgaggt aattgcaggg gactcggttt cgtattttct cttggggtgt gtttcattcg tcagttgttg gtcggcatga gaaggtgaaa tgtggctcat gtgggacatc cgtggatcat tctcgccacc ttgaatagtg gaaactggaa tgcatttgga agagaagaac ggtgctcttc tttcttcccc gggctcgccg tttttacact ggttcctgaa tggacctcag gcgccctggg acttgtgctc ttgctggaac ccacataacg ccggaagcgg acagaccgac ttgcctgttt cacggtgccc gcttcccatg agtccaaacg gaaaattttc ccacgggcat gtaagtcatc tggaagtaag ctgtattgat aataaaggaa agcaaacaca ggagtgtgtg tattcaactg aaataaattc agaaagccct gaaatcaatc tcactgggtg tgtttaaaaa tggcatttgg ggaatttctg ggtcatttgt ccagctgcga aagctgcatc tctgaagcac agtccctgtc ccgcagtgag acttattgat ccgacgtggt gtttccgtgg aaatgattgt gggaaatggc cccttccttt tctctatttg ctgattagac ttcatggtcc ctttctcgtc aggtacagtg atcaaagttg accagcccca gaggaaagct gcccagggca caactcaggg ctccgtagaa ccacagaatc ttgggcgcaa ccctgctcaa gcacccaaat g HDUB4.11 putative promoter sequence upstream of initiation ATG cagcaagctt tggaacagtt ggtgaagccc gaagaactca atggagagaa tgcctatcat tgtggtgttt gtctccagag ggcgccggcc tccaagacgt taactttaca caactctgcc aaggtcctca tccttgtatt gaagagattc cccgatgtca caggcaacaa aattgccaag aatgtgcaat atcctgagtg ccttgacatg cagccataca tgtctcagca gaacacagga cctctcgtct atgtcctcta tgctgtgctg gtccacgctg ggtggagttg tcacaacgga cattactcct cttatgtcaa agctcaagaa ggccagtggt ataaaatgga tgatgccgag gtcaccgcct ctagcatcac ttctgtcctg agtcaacagg cctacgtcct cttttacatc cagaagagtg aatgggaaag acacagtgag agtgtgtcaa gaggcaggga accaagagcc cttggcgtag aagacacaga caggcgagca acgcaaggag agctcaagag agaccacccc tgcctccagg cccccgagtt ggacgagcac ttggtggaaa gagccactca ggaaagcacc ttagaccact ggaaattcct tcaagagcaa aacaaaacga agcctgagtt caacgtcaga agagtcgaag gtacggtgcc tcccgacgta cttgtgattc atcaatcaaa atacaagtgt cggatgaaga accatcatcc tgaacagcaa agctccctgc taaacctctc ttcgacgacc ccgacagatc aggagtccat gaacactggc acactcgctt ccctacgagg gaggaccagg agatccaaag ggaagaacaa acacagcaag agggctctgc ttgtgtgcca gtgatctcag tggaagtacc gacccacacg taggggtgca tacacacaca cacacacaca cacacacaca taactacacc cagaagcgcg cacgcaaaca cacacacacc cacacaaaca cgaacaccgt caatcctaca taaactaatg aggagcccaa gtttctgtct gtacaacagg gacaactgga tagagatggc tacatctcag gatgagcccg catatgggaa acatcaagtt ttggggtcgt gagtcttccg aacctctgga gggactgtct gagtgtttgt gttcatgata ggtgacattc agtgtgtatt tatgaatatg acctaccgac gtgtaggttt gcgtgtgagg taattgcagg ggactcggtt tcgtattttc tcttggggtg tgtttcattc gacagttgtt ggtcggcacg agaaggtgaa atttggctca tgtgggacat ccgtggatca ttctcgccac cttgaatagt ggaaactgga atgcatttgg aagagaagaa cggtgctctt ctttcttccc cgggctcgcc gtttttacac tagttcctga atggacctca ggcgccctgg gacttgtgct cttgctggaa cccacataac gccggaagca gacagaccga cttgcctgtt tcacggtgcc cgcttcccat gagtccaaac ggaaaatttt cccacgggca tgtaagtcat ctggaagtaa gctgtattga taataaagga aagcaaacac aggagtgtgt gtattcaaca gaaataaatt cagaaagccc tgaaatcaat ctcactgggt gtgtttaaaa atggcatttg gggaatttct gggtcatttg tccagctgcg aaagctgcat ctctgaagca cagtccctgt cccgcagtga gacttattta tccgacgtgg tgtttccgtg gaaatgattg tgggaaatgg ccccttcctt ttctctattt gctgactaga cttcatggtc cctttctcgt caggtacagt gatcaaagtt gaccaacccc agaggaaagc tgcccagggc acaactcagg gctccataga accacagaat cttgggagca accctgctca agcacccaaa tg 

1. An isolated polynucleotide encoding a human deubiquitinating protease selected from the group consisting of hDUB 4.1a, hDUB 4.1b, hDUB 4.2a, hDUB 4.2b, hDUB 4.3, hDUB 4.4, hDUB 4.5, hDUB 4.6, hDUB 4.7, hDUB 4.8, hDUB 4.9, hDUB 4.10, hDUB 4.11, hDUB 8.1, hDUB 8.2, hDUB 8.3, hDUB 8.5, hDUB 8.6, hDUB 8.7, hDUB 8.8, hDUB 8.9, hDUB 8.10, and hDUB 8.11.
 2. An isolated polypeptide comprising a human deubiquitinating protease selected from the group consisting of hDUB 4.1a, hDUB 4.2a, hDUB 4.2b, hDUB 4.3, hDUB 4.4, hDUB 4.5, hDUB 4.6, hDUB 4.7, hDUB 4.8, hDUB 4.9, hDUB 4.10, hDUB 4.11, hDUB 8.1, hDUB 8.2, hDUB 8.3, hDUB 8.5, hDUB 8.6, hDUB 8.7, hDUB 8.8, hDUB 8.9, hDUB 8.10, and hDUB 8.11.
 3. A method of using a polynucleotide according to claim 1, wherein the polynucleotide is used in an assay to identify an inhibitor of a hDUB of claim
 1. 4. A method of using a polypeptide according to claim 2, wherein the polypeptide is used in an assay to identify an inhibitor of a hDUB of claim
 2. 5. A method of reducing inflammation by regulating proinflammatory cytokine signaling, by administering a compound capable of inhibiting a polypeptide according to claim
 2. 6. A method of modulating an autoimmune disease by altering cytokine receptor signaling involved in lymphocytes proliferation, by administering a compound capable of inhibiting a polypeptide according to claim
 2. 7. A method of modulating an immune reaction during infection, by administering a compound capable of inhibiting a polypeptide according to claim
 2. 8. A method of reducing inflammation by regulating proinflammatory cytokine signaling, by administering a compound capable of altering regulation of transcription of a polynucleotide of claim
 1. 9. A method of modulating an autoimmune disease by altering cytokine receptor signaling involved in lymphocytes proliferation, by administering a compound capable of altering regulation of transcription of a polynucleotide of claim
 1. 10. A method of modulating an immune reaction during infection, by administering a compound capable of altering regulation of transcription of a polynucleotide of claim
 1. 11. A method of identifying a modulator of a human deubiquitinating protease, wherein a compound is added to the reporter assay comprising a polynucleotide immediately 5′ to a human deubiquitinating protease selected from the group consisting of hDUB 4.1a, hDUB 4.1b, hDUB 4.2a, hDUB 4.2b, hDUB 4.3, hDUB 4.4, hDUB 4.5, hDUB 4.6, hDUB 4.7, hDUB 4.8, hDUB 4.9, hDUB 4.10, hDUB 4.11, hDUB 8.1, hDUB 8.2, hDUB 8.3, hDUB 8.5, hDUB 8.6, hDUB 8.7, hDUB 8.8, hDUB 8.9, hDUB 8.10, and hDUB 8.11 operatively linked to a reporter gene, and the effect of the compound is determined. 